Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq47958 96.9 7e-15 seq2078 91.5 3e-13 seq115991 87.8 4e-12 seq76293 87.8 4e-12 >seq47958 Length=6020 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||| | ||||| || || | ||| |||| || | ||| | ||| || ||| || ||| Sbjct 5512 ATAGTTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAA 5571 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || | | |||| | |||| |||||||| ||||| ||||| || ||||||||||||||| Sbjct 5572 TCTGCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCA 5631 Query 192424 GGTGGTATTCCTTCTTTATCTTG 192446 || || || ||||| ||||| || Sbjct 5632 GGAGGGATGCCTTCCTTATCCTG 5654 >seq2078 Length=2300 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || ||||| | |||| ||| || |||||| || || Sbjct 2167 ATACCACCACGCAGACGAAGCACCAAATGGAGGGTAGACTCCTTCTGGATATTGTAGTCT 2108 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | || || ||||||||||| | ||||| || ||||| Sbjct 2107 GCTAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGG 2048 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || ||| || || || || | || || || Sbjct 2047 GGAATGCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCG 1988 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| || ||||| || || || | ||| |||||||| Sbjct 1987 ACCTCAAGGGTAATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 1938 >seq115991 Length=9835 Score = 87.8 bits (96), Expect = 4e-12 Identities = 156/228 (68%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||| || || | || | |||| |||||| |||||||||||| | Sbjct 6474 ACCACCACGGAGACTGAAAACAAGGTGCAGGGTAGACTCTTTCTGGATATTATAATCGGC 6415 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| ||||| || || || |||||||| || | ||||| || || Sbjct 6414 CAAAGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACC-----TGATCCGGCGG 6360 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || |||||||| || || ||| ||||| || | ||| || || || Sbjct 6359 GATACCCTCCTTATCTTGAATCTTGGCTTTGACATTGTCAATGGTATCAGAGCTCTCCAC 6300 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||| ||||| || ||||| || | || | ||| |||||||| Sbjct 6299 CTCCATAGTGATGGTCTTGCCAGTCAAAGACTTCACAAAAATCTGCAT 6252 >seq76293 Length=4593 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || ||||| | ||| | |||||| || || ||||| Sbjct 339 ATCCCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCT 280 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| | | || || | || || || |||||||| | ||||| || || || Sbjct 279 GCCAGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGG 220 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || || || |||||| || | ||||| ||| Sbjct 219 GGAATGCCTTCTTTGTCCTGAATCTTTGCCTTGACATTATCAATTGTGTCTGAGCTTTCC 160 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | |||||||||||| || || || || || | ||| || |||||| Sbjct 159 ACTTCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCATT 109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982993834529700