Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq71799 129 2e-24 seq63325 125 2e-23 seq79403 122 3e-22 seq80815 98.7 3e-15 >seq71799 Length=4368 Score = 129 bits (142), Expect = 2e-24 Identities = 315/471 (67%), Gaps = 16/471 (3%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948 ||||| || ||||| |||||||| | |||| ||| | | || ||| |||||| Sbjct 2253 ATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGTGTTACCCTCAAAACCATCC 2312 Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008 || ||| |||| |||||||| || ||||| ||||||||||| |||| || Sbjct 2313 ATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTG---CCTC------CA 2363 Query 289009 CCCGAATC--GCTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || | || | |||| ||| ||||||||||||||||| |||| || | | || Sbjct 2364 CCA-ATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 2422 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 || | ||||| | || | ||| | || | || || || || |||| |||||| Sbjct 2423 AGGTGCATTTTCCTTAGCCTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACCAAC 2482 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTG 289183 | ||||||| ||||| |||||| | || | | || | || | ||| ||||| || | Sbjct 2483 AAACATTTCAACAAACTCAGAACCTGAGA-TAGAGAAAAAAGGAACACCAGCTTCACCAG 2541 Query 289184 CTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCT 289243 | | |||| |||| || || ||||| || ||||| || || || | | ||||| || | Sbjct 2542 CAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGGAGGGCCAACAAGAAGAACCCCTT 2601 Query 289244 TTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTT 289303 | || | || ||| ||| | || ||||||| ||||||| || || || | || Sbjct 2602 TAGGAATGCGAGCTCCAACAGCAGTGAATCTCTCAGGCTTCTTTAAGAACTCCACCACTT 2661 Query 289304 CCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 || ||| || | || || ||||| || || |||||| |||| |||| Sbjct 2662 CCACAAAATCCTGCTTGGCTTCATCCACCCCAGCAACATCATCAAATGTAA 2712 >seq63325 Length=8406 Score = 125 bits (138), Expect = 2e-23 Identities = 234/341 (69%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| |||||| | |||||| || |||||| ||| | | | | Sbjct 4180 ATTTCTCACAGTCCCATCATATTTGACCATAATATCCTCCATAGCCTTCACCAGTCTCCT 4239 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||||||||| |||||| || || || ||||| || ||||| | | ||| || Sbjct 4240 CTGGATATAACCAGTCTCAGATGTCTTGACTGCAGTATCTATAAGACCTTCCCTACCTCC 4299 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| || || | ||| | || ||| || || | || |||| || || Sbjct 4300 CATAGCATGAAAAAAGAACTCCTGTGGAGTTAGTCCTTGAAGGTATGAATTCTCTACAAA 4359 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCAT 302776 ||||| || || || |||| ||| || || ||||||| || | || | | | Sbjct 4360 GCCACGACTTTCAGGTCCATAGTCGTCCTTAGTGAAATGTGGCAAAGTACGGTCTATGA- 4418 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || ||||| || || || || ||||| ||||||||||| | || | | ||||||| | Sbjct 4419 AACCATATGGAATTCGTTTACCCTCAACATTCTGCTGTCCAACACAAGCAGTCATCTGTG 4478 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 | ||||| | | ||| ||||| || ||||| | |||||| Sbjct 4479 ATATATTGATAAAACTTCCCTTCGATCCAGCTGTAACCATA 4519 Score = 95.1 bits (104), Expect = 4e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 301864 ACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGT 301923 ||||||||| ||||||| ||||| ||||| | ||||| | |||||||||||| |||| Sbjct 3485 ACACCAGCATAGTGGAATGTATTGAGAGTCATCTGAGTGGCAGGCTCACCAATAGATTGT 3544 Query 301924 GCCGCAATCATACCAACCATTTCTCCTGGTGCTACAA 301960 || |||| ||||||| |||||| || |||| ||||| Sbjct 3545 GCAGCAACAATACCAATCATTTCCCCAGGTGATACAA 3581 >seq79403 Length=15757 Score = 122 bits (134), Expect = 3e-22 Identities = 233/341 (68%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| ||||| | |||||| || |||||| ||| | | | | Sbjct 10509 ATTTCTCACAGTCCCGTCATATTTGACCATAATATCCTCCATAGCCTTCACCAGTCTCCT 10568 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| |||||| || || || || || || ||||| | | ||| || Sbjct 10569 CTGGATATACCCAGTCTCAGATGTCTTGACTGCAGTGTCTATAAGACCTTCCCTACCTCC 10628 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | ||| | || ||| |||| || | || | || || || Sbjct 10629 CATAGCATGAAAGAAGAACTCCTGTGGAGTTAGTCCCCGAAGGTATGAATTTTCTACAAA 10688 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCAT 302776 ||||| || || || |||| ||| || ||||| |||| || | || | | | Sbjct 10689 GCCACGACTTTCTGGTCCATAGTCGTCCTTAGTGAAGTGGGGCAAAGTACGGTCTATGA- 10747 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || |||||||| || || || ||||| ||||||||||||| || | | ||||||| | Sbjct 10748 ACCCATATGGGATTCGTTTACCCTCAACATTCTGCTGTCCCACACAAGCAGTCATCTGTG 10807 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 | || || | | ||| ||||| || || || | |||||| Sbjct 10808 ATATGTTGATAAAACTTCCCTTAGATCCGGCTGTAACCATA 10848 >seq80815 Length=8550 Score = 98.7 bits (108), Expect = 3e-15 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||| ||||| ||| ||||| ||||| |||||||| | ||| || || | | Sbjct 7236 TACCTTTCCTTTTGCCTCCCCCCTGATCAACATAACGAGCAGTATCATTAAAAACTCGCA 7295 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||||||||| || |||||||| || ||||| ||||| ||||||| |||| | | Sbjct 7296 GCATAGGAATGATGCCATTGGATGTCCCATTTGTTCCACGAATATAGCTGCCAGTGGCAC 7355 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| || |||| | ||||| || || | |||| || ||| ||||||| Sbjct 7356 GAATGTTGTGAACGGAGACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCT 7415 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | | |||| | || |||||||| |||||||| ||| Sbjct 7416 TCAAGGTATCATATATGCCTTCAATGCTATCATCTTTCAT 7455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469595752430014