Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq112910 136 4e-27 seq75364 107 2e-18 seq72447 107 2e-18 seq68602 84.2 2e-11 >seq112910 Length=6904 Score = 136 bits (150), Expect = 4e-27 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 151496 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTT 151555 ||||||| |||| |||||| ||||| ||||| || ||||| ||||| || ||||| ||| Sbjct 4216 GGTTACAGATTCGATCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTT 4275 Query 151556 GGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTC 151615 || || | |||||| |||| ||| || |||||||| ||||| | ||||||||| | Sbjct 4276 GGCCGATTGATCTTCTAATATGCTAGTTTTAACAATTCTCGTTCTTTACACTTCTTCTTA 4335 Query 151616 GCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGC 151650 || || |||||||| || |||||||||||||| || Sbjct 4336 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGC 4370 >seq75364 Length=8603 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 151994 AGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTG 152053 ||||||| |||||||||||| | |||||| | ||||||||| || ||| ||||| Sbjct 5067 AGATGACGCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTG 5008 Query 152054 TCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAG 152113 | ||||| ||||| ||| | ||||| || ||||| || |||||||| || ||| Sbjct 5007 CAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTACAGTGGACCAGTC 4948 Query 152114 TGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTC-GTGCTGACCTGTGTTG 152172 ||| || ||| | ||||| |||| || ||| ||| || ||||||||||||||| Sbjct 4947 TGATGGTTCCTTCCTTGATGACAACCAAAT-GAAGGAGGGTTATGTGCTGACCTGTGTTT 4889 Query 152173 CATATCCAACTTCTGA 152188 | |||||| | || || Sbjct 4888 CGTATCCATCCTCAGA 4873 >seq72447 Length=2500 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 151994 AGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTG 152053 ||||||| |||||||||||| | |||||| | ||||||||| || ||| ||||| Sbjct 1905 AGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTG 1964 Query 152054 TCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAG 152113 | ||||| ||||| ||| | ||||| || |||||||| ||| ||||||| ||| Sbjct 1965 CAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATTGTAGCAGGTTCAGTTGACCAGTC 2024 Query 152114 TGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATT-CGTGCTGACCTGTGTTG 152172 ||| || ||| | ||||| |||| | |||| ||| || ||||||||||||| Sbjct 2025 TGATGGTTCCTTCCTTGATGACAACCA-AATGAAGGAGGGTTATTTGCTGACCTGTGTCT 2083 Query 152173 CATATCCAACTTCTGA 152188 |||| ||| |||| || Sbjct 2084 CATACCCATCTTCAGA 2099 >seq68602 Length=1998 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 152046 TACTCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTT 152105 ||||| ||||| || ||| | || || || || || || ||| |||| ||| || || Sbjct 653 TACTCCTGTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTC 594 Query 152106 GATCAGAGTGACCA-ATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGAC 152164 || ||| |||||| | | |||||| |||||||||||||||| || || || || || Sbjct 593 GACCAGTCTGACCAGAGCTTTCTTG-ATGATGACCAGATTGATGGTGGCTTTGTCCTCAC 535 Query 152165 CTGTGTTGCATATCCAACTTCTGATGTCACCCT 152197 ||||| || ||||| | |||||||| || || Sbjct 534 TTGTGTCGCCTATCCTTCCTCTGATGTTACTCT 502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548812929869840