Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq53411 219 5e-51 seq53110 98.7 1e-14 seq66182 93.3 5e-13 seq107186 87.8 2e-11 seq64583 87.8 2e-11 >seq53411 Length=6979 Score = 219 bits (242), Expect = 5e-51 Identities = 227/295 (77%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||||| ||||| | | |||| | || ||| Sbjct 3423 GAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTGG 3482 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||||| ||||| || |||||| |||||||||||| ||||||||| Sbjct 3483 ACCTCCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAAG 3542 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| ||||| |||| || | | || | |||||||| || Sbjct 3543 AAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGG-CG 3601 Query 869813 GTGTCGGCGCT-GAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 || ||| ||| || ||||||||||||||||||| ||| ||||||||||| ||||| Sbjct 3602 CTGGTCTTGCTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGTA 3661 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926 ||| ||||| | | | |||| | || ||||| | | || |||| |||||| Sbjct 3662 CATTTCCCAGATCTCCGGGTACTGAATCGGGAACATGCAGAACCGGTCCGGGTTG 3716 >seq53110 Length=6395 Score = 98.7 bits (108), Expect = 1e-14 Identities = 121/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 1592135 GACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAAC 1592194 ||||| || || ||||||||||| | | ||| ||||| |||| | || |||||| Sbjct 4922 GACAAAGAATTCGTCGACGTCGAGCTGGGCCTCCTGTTTGATCTGATATTGGCAGCCAAC 4863 Query 1592195 TACCTCGACATCAAGCCTCTGCTCGATCTTGGG-TGCAAGTCTGTGGCCAACATGATCAA 1592253 || || |||||||| ||||| || |||| ||| || ||||||| |||||||||| Sbjct 4862 TATCTGAACATCAAGGAGCTGCTAGA-CTTGACATGCCAGACTGTGGCAGACATGATCAA 4804 Query 1592254 GGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||| ||| | ||||| ||||| ||| ||| || |||||| || Sbjct 4803 GGGAAAGACTCCCGAAGAGATTCGCCAGATTTTCAACATCCAG 4761 >seq66182 Length=5869 Score = 93.3 bits (102), Expect = 5e-13 Identities = 120/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 1592135 GACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAAC 1592194 ||||| || || ||||||||||||| | ||| ||||| |||| | || |||||| Sbjct 123 GACAAAGATTTCGTCGACGTCGAGCAGGACCTCCTGTTTGATCTGATATTGGCAGCCAAC 182 Query 1592195 TACCTCGACATCAAGCCTCTGCTCGATCTTGGG-TGCAAGTCTGTGGCCAACATGATCAA 1592253 || || ||||| ||||| || |||| || || ||||||| |||||||||| Sbjct 183 TATCTAAACATCGCAGGGCTGCTGGA-CTTGACATGTCAGGCTGTGGCGGACATGATCAA 241 Query 1592254 GGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||| ||| | ||||| |||| |||||||| || ||||||||| Sbjct 242 GGGAAAGACTCCCGAACAGATTCGCAAGACTTTCAACATCAAG 284 >seq107186 Length=4249 Score = 87.8 bits (96), Expect = 2e-11 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || ||||| |||| | || |||||||| || |||||||| || || || |||| Sbjct 4024 CTGTTTGATCTGATATTGGCAGCCAACTATCTGAACATCAAGGAGCTACTGGA-CTTGAC 3966 Query 1592228 -TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTT 1592286 ||| || ||||||| ||||||||||||| ||| | ||||| ||||| ||| |||| || Sbjct 3965 ATGCCAGACTGTGGCAGACATGATCAAGGGAAAGACTCCCGAAGAGATTCGCCAGACTTT 3906 Query 1592287 TAACATCAAG 1592296 ||||||||| Sbjct 3905 CAACATCAAG 3896 >seq64583 Length=3005 Score = 87.8 bits (96), Expect = 2e-11 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || ||||| |||| | || |||||||| || |||||||| ||||| || |||| Sbjct 1070 CTGTTTGATCTGATATTGGCAGCCAACTATCTGAACATCAAGGAGCTGCTGGA-CTTGAC 1012 Query 1592228 T-GCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTT 1592286 | | || ||||||| ||||||||||||| ||| | ||||| |||| |||||||| || Sbjct 1011 TTGTCAGGCTGTGGCGGACATGATCAAGGGAAAGACTCCCGAACAGATTCGCAAGACTTT 952 Query 1592287 TAACATCAAG 1592296 ||||||||| Sbjct 951 CAACATCAAG 942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6097470174919574