Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq76293 109 5e-19 seq80270 98.7 8e-16 seq62381 95.1 1e-14 seq58370 95.1 1e-14 seq66408 93.3 3e-14 >seq76293 Length=4593 Score = 109 bits (120), Expect = 5e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 ||||||||| ||||| || ||||| ||||| ||||||||||| | ||| ||| || Sbjct 109 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 168 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || | | | || || |||||| |||||||||||| | ||| || | Sbjct 169 A-GACACAATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACC 227 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || || || | ||| || || ||||| ||||| | ||| ||| |||| ||||||| Sbjct 228 AGCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACA 287 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||| ||||| || || |||| ||||| Sbjct 288 ACATTCAGAAAGAGTCGACTCTGCATTTGGTG 319 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| ||||||||| ||||||| | ||||| | || || |||||| Sbjct 2 CAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTACAAC 61 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||| |||||||| |||||| |||| | | ||||| || |||| Sbjct 62 ATTCAAAAGGAATCTACCTTGCACTTGGTTCTCCGTCTGCGTGGTGGAA 110 >seq80270 Length=12149 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||| | || || |||||||| ||| | || ||| | Sbjct 822 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 881 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || ||||| ||||||||||| | || || || Sbjct 882 GACACCATTGACAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAG 941 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | ||| || || ||||| ||||||| | | || |||| || ||||| Sbjct 942 CAGAGACTTATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAAT 1001 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || ||||| |||||||| | ||| ||||| | ||||| || || |||| Sbjct 1002 ATCCAAAAGGAATCTACTCTTCACCTGGTGCTCAGACTCCGTGGTGGAA 1050 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 ||||||||| ||||| || ||||| || || ||||| ||||| | ||| ||| || Sbjct 1277 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 1336 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || | | | || || ||||||| |||||||||||| | ||| || | Sbjct 1337 A-GACACAATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCAGACC 1395 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || || || | ||| || || ||||| ||||||| || ||| |||| ||||||| Sbjct 1396 AGCAGAGGCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGTAGGACACTGGCAGATTACA 1455 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||| || || || || || |||| ||||| Sbjct 1456 ACATACAGAAGGAGTCAACTCTGCATTTGGTG 1487 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| || || | ||| ||||| || || || || | ||| ||||||||| ||||| Sbjct 1143 GACAAGGAGGGTATTCCCCCAGATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAG 1202 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 || | ||||| | || || |||||||||||||| ||||| || |||||| |||| | Sbjct 1203 GACGGAAGAACTCTTGCAGACTACAACATTCAAAAGGAATCAACATTGCACTTGGTTCTC 1262 Query 110486 AGACTGCGAGGGGGAA 110501 | ||||| || |||| Sbjct 1263 CGTCTGCGTGGTGGAA 1278 >seq62381 Length=5639 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || |||||||| || || |||| | | ||||| || ||||| || | || ||| Sbjct 848 AATATGCAAATTTTCGTGAAAATTCTGACCGGGAAGACCATCACTATTGAGGTCGAGAGC 789 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| ||| | | || ||| |||| |||||||||||| | || || ||| Sbjct 788 AGTGATACCATCGACAATGTCAAAGCCAAGACCCAGGACAAAGAAGGCATCCCTGTAGAT 729 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| ||||| || | ||| || || || |||| |||| ||||| | |||| |||| Sbjct 728 CAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAAGATGGTAGAACTCTTGCGG-TTAC 670 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| ||||| || || || | ||| ||||||| || || | || |||| Sbjct 669 AACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTGAGGCTAAGGGGAGGAA 618 >seq58370 Length=11695 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||| | || || |||||||| ||| | || ||| | Sbjct 2159 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 2218 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || ||||| ||||||||||| | || || || Sbjct 2219 GACACCATTGACAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAG 2278 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | ||| || || ||||| ||||||| | | || |||| || ||||| Sbjct 2279 CAGAGACTTATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAAT 2338 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| |||||||| | ||| ||||| | ||||| || || || Sbjct 2339 ATCCAAAAGGAATCTACTCTTCACCTGGTGCTCAGACTCCGTGGTGG 2385 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||||||||| || || || ||||| || | || ||| | Sbjct 2843 ATGCAAATCTTTGTCAAAACTTTGACAGGAAAGACCATAACATTGGAGGTAGAGAGTTCA 2902 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| |||||| ||||| || ||| | || ||| || Sbjct 2903 GATACAATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 2962 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || || | ||| || || ||||| ||||||| || || | || ||||||||| Sbjct 2963 CAAAGGCTCATATTTGCTGGAAAGCAGCTCGAGGATGGGAGGACTCTTGCAGATTACAAC 3022 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| || || || || Sbjct 3023 ATTCAGAAGGAGTCCAC 3039 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGG--AGC-CT 110329 |||||||| |||||||| || | |||||||||||||| || | ||| || ||| || Sbjct 2615 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 2674 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | || ||| || ||| ||||| || || | ||| || Sbjct 2675 GAC---ACCATTGATAATGTGAAAGCTAAAATTCAGGACAAGGAGGGTATTCCCCCAGAC 2731 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || | |||| ||| ||||| ||||| ||||||| || ||| | || || || Sbjct 2732 CAGCAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCTGACTAT 2791 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || |||||||| || || || ||||| ||||| | | ||||| || || Sbjct 2792 AATATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGCGGTGG 2841 >seq66408 Length=4853 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| || || | ||| ||||| || || || || | ||| ||||||||| ||||| Sbjct 318 GACAAGGAGGGTATTCCCCCAGATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAG 259 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 || | ||||| | || || |||||||||||||| ||||| || |||||| |||| | Sbjct 258 GACGGAAGAACTCTTGCAGACTACAACATTCAAAAGGAATCAACCTTGCACTTGGTTCTC 199 Query 110486 AGACTGCGAGGGGGAA 110501 ||||||| || |||| Sbjct 198 CGACTGCGTGGTGGAA 183 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 ||||| || ||||| ||||| | || ||||| ||||| ||| |||| || || || Sbjct 867 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 808 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || ||| ||||| ||||| || || | ||| ||| Sbjct 807 GAC---ACTATTGACAATGTCAAAGCAAAGATCCAAGACAAGGAGGGAATTCCCCCGGAC 751 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||||| || || | ||| || || ||||| ||||||| | ||| | || || ||| Sbjct 750 CAACAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGGCGTACACTCGCTGACTAC 691 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || || | ||| |||| | ||||| || || || Sbjct 690 AACATTCAGAAAGAGTCCACTCTCCACTTGGTTCTCAGACTCCGTGGTGG 641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412248777782246