Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq53411 194 3e-43 >seq53411 Length=6979 Score = 194 bits (214), Expect = 3e-43 Identities = 234/318 (74%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 794347 TCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 794406 |||||| |||||| ||||| ||| || || ||||| || |||||||| || ||| Sbjct 3152 TCGCGA--GATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAGCCCGCGCTTTTTTAGC 3209 Query 794407 CAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACG 794466 ||||| || || ||||| || |||||||| ||||| || || ||| ||| ||| | ||| Sbjct 3210 CAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCTTCCACGCAGGCGAAGGCCACG 3269 Query 794467 AGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCC 794526 | ||||| || ||||| ||| ||| || |||||| |||| ||||||| ||| Sbjct 3270 ATTCGCTCCGCGAAAGTCTCCGAGCCGTC------GATCCATTTCAGGGCCCACTGCGCC 3323 Query 794527 TTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGG 794586 |||||| || | || | ||||||| ||| | ||||| || |||||| ||| | Sbjct 3324 TTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCTGAAGAGACGGGATTTCTCGGCCGAG 3383 Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 || |||| |||||| |||| |||||| ||| |||| ||||||||||| || || ||| Sbjct 3384 TCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAATCGCG 3443 Query 794647 ATCTGGAAGCCATAAAAG 794664 ||||||||||| || ||| Sbjct 3444 ATCTGGAAGCCGTAGAAG 3461 Score = 165 bits (182), Expect = 1e-34 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | || ||||||||||||||||| | ||||| || ||||| ||||||||| Sbjct 3468 GCCTCCGAGACCTGGACCTCCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCG 3527 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| |||||||||||||| |||| ||||| |||| || | | || Sbjct 3528 TCGGAGGCGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGG 3587 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | |||||||| | ||| |||| |||||||||||||||||||| || || ||| Sbjct 3588 GTTTCCCAGTGGCGCTGGTCTTGCTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCC 3647 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||||| |||||||| ||||| ||| |||| | || ||||||| Sbjct 3648 TCGGCCTTCTTGTACATTTCCCAGATCTCCGGGTACTGAATCGGGAACA 3696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7903713136473858