Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq76293 114 1e-20 seq66408 104 2e-17 seq80270 98.7 8e-16 seq58370 95.1 1e-14 seq62381 93.3 3e-14 seq67744 89.7 4e-13 seq57720 87.8 1e-12 >seq76293 Length=4593 Score = 114 bits (126), Expect = 1e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||||||||| || ||||| || || ||||||||||| | ||| ||| ||| Sbjct 109 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 168 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | || || ||||||| || ||||||||| | ||| || | Sbjct 169 A-GACACAATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACC 227 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || || ||||| ||||||| || ||| |||| || |||| Sbjct 228 AGCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACA 287 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||| || ||||| || |||| ||||| Sbjct 288 ACATTCAGAAAGAGTCGACTCTGCATTTGGTG 319 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| ||||||||| ||||||||| | ||| | || |||||||| Sbjct 1 GCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTACAA 60 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||||||||| ||||| |||||| |||| Sbjct 61 CATTCAAAAGGAATCTACCTTGCACTTGGT 90 >seq66408 Length=4853 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| || ||||| || || | || || || || || ||| | || ||| ||| Sbjct 412 AATGCAGATCTTTGTAAAGACGCTTACTGGGAAGACAATCACCCTGGAGGTGGAAAGCTC 353 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 |||||| | | | | || || |||||| || || || || | ||| |||| Sbjct 352 -CGATACAATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGATC 294 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| ||||||||| ||||||||| | ||| | || ||||||| Sbjct 293 AGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTACA 234 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||||||||||| || || |||||| |||| | || |||| || |||| Sbjct 233 ACATTCAAAAGGAATCAACCTTGCACTTGGTTCTCCGACTGCGTGGTGGAA 183 >seq80270 Length=12149 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || ||| | || || |||||||| ||| | || ||| | Sbjct 822 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 881 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || |||||| || |||||||| | || || ||| Sbjct 882 GACACCATTGACAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAG 941 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||||||||| | ||| || || ||||| ||||| | | || |||| |||||||| Sbjct 942 CAGAGACTTATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAAT 1001 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || |||||||| ||||| | ||| ||||| | ||| | || || |||| Sbjct 1002 ATCCAAAAGGAATCTACTCTTCACCTGGTGCTCAGACTCCGTGGTGGAA 1050 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || | || || || || || || | || ||| ||| Sbjct 1049 AATGCAAATCTTTGTGAAGACCCTGACTGGGAAGACAATCACATTGGAGGTGGAAAGCTC 1108 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | | || ||| |||||| || || || || | ||| |||| Sbjct 1109 T-GATACAATTGACAATGTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGATC 1167 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| ||||||||| ||||||||| | ||| | || ||||||| Sbjct 1168 AGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTACA 1227 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||| || || |||||| |||| Sbjct 1228 ACATTCAAAAGGAATCAACATTGCACTTGGT 1258 >seq58370 Length=11695 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || ||| | || || |||||||| ||| | || ||| | Sbjct 2159 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 2218 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || |||||| || |||||||| | || || ||| Sbjct 2219 GACACCATTGACAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAG 2278 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||||||||| | ||| || || ||||| ||||| | | || |||| |||||||| Sbjct 2279 CAGAGACTTATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAAT 2338 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || |||||||| ||||| | ||| ||||| | ||| | || || || Sbjct 2339 ATCCAAAAGGAATCTACTCTTCACCTGGTGCTCAGACTCCGTGGTGG 2385 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||||||||| ||||| || ||||| || | || ||| | Sbjct 2843 ATGCAAATCTTTGTCAAAACTTTGACAGGAAAGACCATAACATTGGAGGTAGAGAGTTCA 2902 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| |||||| || || || ||| | || ||| ||| Sbjct 2903 GATACAATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 2962 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || || || | ||| || || ||||| ||||| | | || | || || |||||| Sbjct 2963 CAAAGGCTCATATTTGCTGGAAAGCAGCTCGAGGATGGGAGGACTCTTGCAGATTACAAC 3022 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| |||||||| || Sbjct 3023 ATTCAGAAGGAGTCCAC 3039 >seq62381 Length=5639 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||||||||| || |||| | | || || || ||||| || | || ||| Sbjct 848 AATATGCAAATTTTCGTGAAAATTCTGACCGGGAAGACCATCACTATTGAGGTCGAGAGC 789 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 | ||||| ||| | | || ||| |||| || ||||||||| | || || ||| Sbjct 788 AGTGATACCATCGACAATGTCAAAGCCAAGACCCAGGACAAAGAAGGCATCCCTGTAGAT 729 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || |||||||| || | ||| || || || |||| || | | ||| | |||| ||| Sbjct 728 CAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAAGATGGTAGAACTCTTGCGGT-TAC 670 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 ||||| ||||||||||| || | ||| |||||||||| Sbjct 669 AACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTGAG 632 >seq67744 Length=10152 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || ||| | || || |||||||| ||| | || ||| | Sbjct 294 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 235 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||||| |||||||| || | || || ||| Sbjct 234 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 175 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || ||||| ||||| | | || |||| || |||||| Sbjct 174 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAAC 115 Query 107736 ATTCAAAAGGAGTCTAC 107752 |||||||||||||| || Sbjct 114 ATTCAAAAGGAGTCCAC 98 >seq57720 Length=9334 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || ||||| |||||||| ||||| || | || ||| ||| | Sbjct 7838 ATGCAGATTTTTGTGAAGACTTTGACAGGCAAGACCATCACTTTGGAGGTTGAGAGCTCG 7897 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| ||||| ||||| ||||| | || ||| || Sbjct 7898 -GATACCATTGATAATGTCAAAGCCAAGATCCAGGATAAGGAAGGGATCCCACCGGACCA 7956 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || || ||||| ||||||| || |||| || ||||| Sbjct 7957 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTGGCTGATTACAA 8016 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| |||||||| || | ||| |||| Sbjct 8017 CATTCAGAAGGAGTCCACCCTTCACTTGGT 8046 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| || ||||| |||| ||||| ||||| ||| |||| ||| ||| Sbjct 7382 ATGCAAATTTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTC- 7440 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || ||||| || || || ||| | || || || Sbjct 7441 CGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCA 7500 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||| ||||||| | || | || |||||||| Sbjct 7501 GCAGAGGCTAATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGTACCCTCGCCGACTACAA 7560 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | ||| ||||| Sbjct 7561 CATCCAGAAGGAGTCGACTCTCCACCTGGTG 7591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398304030615358