Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq112910 140 4e-28 seq68602 125 9e-24 seq75364 89.7 6e-13 seq72447 89.7 6e-13 >seq112910 Length=6904 Score = 140 bits (154), Expect = 4e-28 Identities = 124/155 (80%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 178215 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTC 178274 ||||||| |||| ||||| |||||||| ||||| ||||| || || |||||||| || Sbjct 4216 GGTTACAGATTCGATCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTT 4275 Query 178275 GGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTC 178334 || || ||||||||| ||||||| || ||||| || ||||| | ||||||||| | Sbjct 4276 GGCCGATTGATCTTCTAATATGCTAGTTTTAACAATTCTCGTTCTTTACACTTCTTCTTA 4335 Query 178335 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGC 178369 || || ||||||||||| || |||||||||||||| Sbjct 4336 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGC 4370 >seq68602 Length=1998 Score = 125 bits (138), Expect = 9e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 ||||| || |||||||| ||||| || || || || || || || ||| | || || Sbjct 716 TTTGAGTGCCCTGATGATGTCTACATTCTCGACGCCGCCGAGGAGGCCGGTCTCGACCTC 657 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636 || ||||||||||| || ||| | || ||| |||| || || || | ||||| || || Sbjct 656 CCTTACTCCTGTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACC 597 Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATG 138696 || || |||||||||||| || |||||||||||||| |||| | || ||| || | Sbjct 596 GTCGACCAGTCTGACCAGAGCTTTCTTGATGATGACCAGATTGATGGTGGCTTTGTCCTC 537 Query 138697 ACTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755 ||||| || || || || | || ||| || ||||||| | || ||||| || || Sbjct 536 ACTTGTGTCGCCTATCCTTCCTCTGATGTTACTCTTGAAACCCACAAGGAGGAGGAGCT 478 >seq75364 Length=8603 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 138507 AGAACAAATCTTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGG 138566 ||||| ||| ||||| | | ||||| |||||| | ||| | ||||| | ||||| Sbjct 5086 AGAACGAAT--TTGACGCTCCAGATGACGCTTACATCTTGGATTCAGCTGAGAATGCAGG 5029 Query 138567 TATTGATCTTCCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGT 138626 |||| || ||||| || || | ||||| ||||| || |||||||| || || | || Sbjct 5028 AGTTGAGCTGCCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGT 4969 Query 138627 TGAAGGAACTGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAAT 138677 | ||| || || || |||||||| || ||||||||||| ||||||| Sbjct 4968 AGCAGGTACAGTGGACCAGTCTGATGGTTCCTTCCTTGATGACAACCAAAT 4918 >seq72447 Length=2500 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 |||||| | | ||||| |||||| | ||| | ||||| | ||||| |||| || Sbjct 1894 TTTGACGCTCCAGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTG 1953 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636 ||||| || || | ||||| ||||| || |||||||| || || | || | ||| | Sbjct 1954 CCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATTGTAGCAGGTTCA 2013 Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATT-TATCAT 138695 || || |||||||| || ||||||||||| |||||| || || ||| || | | | Sbjct 2014 GTTGACCAGTCTGATGGTTCCTTCCTTGATGACAACCAAA-TGAAGGAGGGTTATTTGCT 2072 Query 138696 GACTTGCGTAGCATACCCCACATCCGATTGT 138726 ||| || || ||||||| | || || ||| Sbjct 2073 GACCTGTGTCTCATACCCATCTTCAGACTGT 2103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604775188489520