Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq79403 100 7e-16 seq57720 87.8 4e-12 >seq79403 Length=15757 Score = 100 bits (110), Expect = 7e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||||||| || | || || |||||| | ||||| || |||||||||||| Sbjct 12111 CATTTGAATGATGGAGACTTTGTCCTCTTCAATCGTCAACCCAGTCTCCATAAAATGTCT 12052 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 || |||| || | | ||||| | | || | || |||||| ||||| | || Sbjct 12051 ATCATGGGGCACAGAATCAAAATCATGCCTTACTCAACTTTTCGACTAAATCTCTCTGTC 11992 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | ||||||| ||||| ||||||||||| ||||||||||||||||| || || || ||| Sbjct 11991 ACTTCGCCTTACAATGCTGATTTTGATGGGGATGAAATGAATATGCACGTTCCCCAGTCA 11932 >seq57720 Length=9334 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/160 (73%), Gaps = 7/160 (4%) Strand=Plus/Plus Query 305331 TTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAG 305390 |||| ||||| ||||||||| ||||| |||||| | ||| ||||| | ||| Sbjct 1204 TTCTTTTCAACAGGCAACCAAGCTTGCATCGTATGTCTGTCATGTGTCATAGGGC--AAG 1261 Query 305391 TATTAT-CTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGC 305445 ||||| | | |||| || || | || |||| | || ||| | ||||||||||| Sbjct 1262 GATTATGCCGCATTGGAAGACGTTGAGGTTTAATGAATCTGTTTGCAACCCTTATAATGC 1321 Query 305446 GGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||||||||| |||||||||||||| ||||| || ||| Sbjct 1322 TGATTTTGATGGTGATGAAATGAATATTCATGTCCCACAA 1361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185021194072942