Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq53411 104 2e-17 seq46178 86.0 6e-12 >seq53411 Length=6979 Score = 104 bits (114), Expect = 2e-17 Identities = 160/225 (71%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 46761 CCATGCGTTCGC-AAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCAC 46819 || ||||| ||| |||||||| ||||||||| |||| |||||||| || | | || Sbjct 3340 CCTTGCGT-CGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGGCTCG---GAGAC 3285 Query 46820 GCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTT 46879 | || ||||| || ||||| ||||| || ||||| | || || ||||| || || Sbjct 3284 TTTCGCGGAGCGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTT 3225 Query 46880 TGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGA 46939 ||| || |||| | |||| || | |||||||| ||||| ||| ||||| Sbjct 3224 CTGCGCGATATTTTGGCTAAAAAAGCGCGGGCTGATGCCGGGTCTGACCTTCTCGAACGA 3165 Query 46940 GTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT 46984 |||||||||||| || ||||| || ||| ||||| ||||| || Sbjct 3164 GTTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGCCT 3120 >seq46178 Length=11793 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||| || |||||||||||| || ||| || || |||||||| || |||| ||| Sbjct 2768 CTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGA 2709 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | |||||||| ||||| ||||| |||||||| || || || || || | | | Sbjct 2708 TGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGT 2649 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | || ||| | |||||| |||| || | || || || || || ||||| | || Sbjct 2648 CGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGA 2589 Query 132114 AAATCTGCAT 132123 |||||||||| Sbjct 2588 AAATCTGCAT 2579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475909258939920