Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq53411 329 5e-84 >seq53411 Length=6979 Score = 329 bits (364), Expect = 5e-84 Identities = 413/562 (73%), Gaps = 10/562 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||| ||| | |||||| |||| || | ||||||| || | |||| | | Sbjct 3733 GAGCCGCTCCTGATGGCCAACCCGGACCGGTTCTGCATGTTCCCGATTCAGTACCCGGAG 3674 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || |||||||||||| || ||||||||||| || || |||||||||||||||||||| || Sbjct 3673 ATCTGGGAAATGTAC-AAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGGAGGTCGATCT 3615 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 || ||| | |||||||| | || | | || |||| || ||||||| || Sbjct 3614 CGAGCAAGACCAGCGCCACTGGGAAACCCTAACCCCCGGCGAGAAGCACTTCATCACTCA 3555 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 |||||||||||| || ||||||| ||| |||||||| |||||| || ||||| | | Sbjct 3554 CGTCCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTCCTCGAGAATCTCGCCGGAAGGT 3496 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | ||||| |||||||| | | ||||| ||| || ||||| ||||||||||| || | Sbjct 3495 TCATGAAGGAGGTCCAGGTCTCGGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCGATTG 3436 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||||||||| || | ||| ||||| |||| |||||| |||| ||| ||| || Sbjct 3435 AGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACATCAAAGACTCGGCCG 3376 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 |||| || ||||| | ||| ||||||| | || | || ||||||||| | | Sbjct 3375 AGAAATCCCGTCTCTTCAGGGCCGTCGACACCATCCCTTGCGTCGCGAAAAAGGCGCAGT 3316 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGGCT 1456194 |||| |||| |||||| || ||| || ||||| || ||||| |||| | || Sbjct 3315 GGGCCCTGAAATGGATC------GACGGCTCGGAGACTTTCGCGGAGCGAATCGTGGCCT 3262 Query 1456195 TTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253 | ||| |||| || || ||||| |||||||| || |||||||| || |||||||| || | Sbjct 3261 TCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTCTGCGCGATATTTTGGCTAAAAA 3202 Query 1456254 AGCGCGGCCTCATGCCCGGTCT 1456275 ||||||| || ||||| ||||| Sbjct 3201 AGCGCGGGCTGATGCCGGGTCT 3180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7166447051543164