Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq112910 138 1e-27 seq72447 105 7e-18 seq75364 100 3e-16 seq68602 89.7 6e-13 >seq112910 Length=6904 Score = 138 bits (152), Expect = 1e-27 Identities = 124/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 160617 GGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTC 160676 ||||| | |||| |||||||||||| ||||| || ||||| || || |||||||| || Sbjct 4216 GGTTACAGATTCGATCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTT 4275 Query 160677 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTG 160736 || || ||||||||| ||||||| || ||||| || ||||| | ||||||||| | Sbjct 4276 GGCCGATTGATCTTCTAATATGCTAGTTTTAACAATTCTCGTTCTTTACACTTCTTCTTA 4335 Query 160737 GCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCT 160772 || || ||||||||||| || ||||||||||| ||| Sbjct 4336 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCT 4371 >seq72447 Length=2500 Score = 105 bits (116), Expect = 7e-18 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| || ||| |||| || | ||||||||||| | ||||||||| | ||||| Sbjct 1915 TACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGG 1974 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 || ||||| |||||||||| || ||| | ||||| |||| ||||||||||| ||| Sbjct 1975 GCATGCTCCACCTGTGCAGGAAAGATTGTAGCAGGTTCAGTTGACCAGTCTGATGGTTCC 2034 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTT-TTGACATGTGTTGCATATCCTAC 161304 ||| | ||||| |||| | |||| || || || |||| ||||| |||| || | Sbjct 2035 TTCCTTGATGACAACCA-AATGAAGGAGGGTTATTTGCTGACCTGTGTCTCATACCCATC 2093 Query 161305 TAGCGATTGTGTGATTCAAACT 161326 | || |||||||| || ||| Sbjct 2094 TTCAGACTGTGTGATCCACACT 2115 >seq75364 Length=8603 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| || ||| |||| || | ||||||||||| | ||||||||| | ||||| Sbjct 5057 TACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGG 4998 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 || ||||| |||||||||| || || | |||||||||| ||||||||||| ||| Sbjct 4997 GCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTACAGTGGACCAGTCTGATGGTTCC 4938 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATT-CCTTTTGACATGTGTTGCATATCCTAC 161304 ||| | ||||| |||| | |||| || || | |||| |||||| | ||||| | Sbjct 4937 TTCCTTGATGACAACCA-AATGAAGGAGGGTTATGTGCTGACCTGTGTTTCGTATCCATC 4879 Query 161305 TAGCGATTGTGTGATTCAAACT 161326 || |||||||| || ||| Sbjct 4878 CTCAGACTGTGTGATCCACACT 4857 >seq68602 Length=1998 Score = 89.7 bits (98), Expect = 6e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 |||||| | || || || || ||||| || | || | || || ||||| || ||| Sbjct 695 TACATTCTCGACGCCGCCGAGGAGGCCGGTCTCGACCTCCCTTACTCCTGTCGCGCCGGT 636 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 | ||||||||||| || || || || || || || || ||||||||||||||| | Sbjct 635 TCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTCGACCAGTCTGACCAGAGC 576 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCT 161302 || | ||||||||||||||||| ||| || | | || ||||| || |||||| Sbjct 575 TTTCTTGATGATGACCAGATTGATGGTGGCTTTGTCCTCACTTGTGTCGCCTATCCT 519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558679976496400