Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq80815 127 3e-24 seq53411 114 2e-20 >seq80815 Length=8550 Score = 127 bits (140), Expect = 3e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| |||||||| | || | ||||| | |||| | |||| |||||| ||||| || || Sbjct 7252 TCCCCCCTGATCAACATAACGAGCAGTATCATTAAAAACTCGCAGCATAGGAATGATGCC 7311 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||||||| |||||| || || | || ||||| || || || Sbjct 7312 ATTGGATGTCCCATTTGTTCCACGAATATAGCTGCCAGTGGCACGAATGTTGTGAACGGA 7371 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| ||||| || || ||| ||| | |||||| ||||| || |||||||| Sbjct 7372 GACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTCAAGGTATCATATAT 7431 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||||||| ||||| | ||| || |||||| Sbjct 7432 GCCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 7474 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| | |||||| | |||||||| || |||||||||||| | ||| | |||| | Sbjct 7598 GTTCCAGAATTAAAAAGGGTAGGAGAGGCATGAGTGAACCATCGCTGAGACATGAGATGG 7657 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 |||||| ||| | ||||| ||||| || || ||||| | || || | ||| | | Sbjct 7658 TATGTTCTGATAACAGATTCAATATCATCCTTGTGTATTCCAACAGCAACCCTCATTAGC 7717 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 ||||||||||| | ||||| || | | || || |||||||| | || ||| Sbjct 7718 ATATGCTGAGGCCTCTCTACAACCTTCCCTTGAACCTTTAAGAGGTATGACCTCTCAAGA 7777 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 || || || ||||| |||| || |||||| | || ||||| || Sbjct 7778 GTCTTGAAACCAAAGTAGTCATAGTCAAAGTCCCGATCATAAATGAT 7824 >seq53411 Length=6979 Score = 114 bits (126), Expect = 2e-20 Identities = 378/581 (65%), Gaps = 10/581 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| |||||||| || || ||||| ||||||| || || ||||| || || || || Sbjct 3122 GCACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAG 3181 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 || ||||| || || |||||||| ||||||||||| || ||| ||| ||| || |||| Sbjct 3182 ACCCGGCATCAGCCCGCGCTTTTTTAGCCAAAATATCGC-GCAGAAGCTTCCCGAGAAGA 3240 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA--CTTGTATCATTATG 39792 |||| ||||| || || || || || | || ||| || || || | | | Sbjct 3241 AGATCCCTTCCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGC--CGTC 3298 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 ||||| ||| | ||||| | || || ||| || ||||| || || || | || | Sbjct 3299 GATCCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCT 3358 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 |||||| ||| || | ||||| | || || || | | || || ||||| Sbjct 3359 GAAGAGACGGGATTTCTCGGCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACAT 3418 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || || |||||||| |||||||| ||||| || ||||| || | || || | | Sbjct 3419 CTCGGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGAC 3478 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 || ||||| || ||| | || | ||| || || || || || ||||| Sbjct 3479 CTGGACCTCCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGC 3538 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGT- 40091 || || || | || || | || || | || || |||| || | | | ||||| Sbjct 3539 GAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTG 3598 Query 40092 -CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 | || |||| | ||| || || || || ||||| ||||||||||| ||||| Sbjct 3599 GCGCTG--GTCTTGCTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTC 3656 Query 40151 TTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 |||||||| | ||| || || | || || || || || || Sbjct 3657 TTGTACATTTCCCAGATCTCCGGGTACTGAATCGGGAACAT 3697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685897137892080