Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq102053 109 5e-19 seq46178 95.1 1e-14 seq67744 93.3 4e-14 seq66408 93.3 4e-14 seq80270 91.5 1e-13 seq58370 91.5 1e-13 >seq102053 Length=8183 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | || || || || || || ||||||||| Sbjct 4325 GCCACCGCGGAGGCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 4384 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| |||| ||||||||||| |||||| | ||||| ||||| || |||||||| Sbjct 4385 GAGTGTGCGGCCGTCCTCGAGCTGTTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 4444 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| |||| | || | ||||| | || || || Sbjct 4445 GATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCCAC 4504 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || ||||| || |||||||| ||||| ||||| Sbjct 4505 CTCCAGAGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 4552 >seq46178 Length=11793 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||| || || ||||||||| || | |||| |||| |||||||| || |||||| | | Sbjct 2768 CTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGA 2709 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 |||||||||| ||||| || || | || || || || ||||||| || | | | Sbjct 2708 TGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGT 2649 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | ||||| || || || || ||||| || | || ||||| || |||||||| | Sbjct 2648 CGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGA 2589 Query 27238 AGATTTGCAT 27247 | || ||||| Sbjct 2588 AAATCTGCAT 2579 >seq67744 Length=10152 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || || |||||||| ||||| || || | |||| | || || Sbjct 86 ACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTCA 145 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | ||||| | ||| || || || || | |||||||||||| Sbjct 146 AGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTGA 205 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | ||||| | ||||| || | ||||| | ||| Sbjct 206 ATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTTC 265 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| ||||||||||||||||| Sbjct 266 CCAGTGAGAGTCTTCACAAAGATTTGCAT 294 >seq66408 Length=4853 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || ||||| ||||| |||||||| || ||| ||| | || || Sbjct 659 ACCAAGTGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCGAGTGTA-CGCCCATCCTC 717 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||| || || || | || || | ||||| ||||| || | ||||| || || Sbjct 718 GAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTG 777 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| ||| | | || | |||||| | | |||||| || || || || | || Sbjct 778 GATCTTTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATGGTCTT 837 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || || |||||||||||||| ||||| ||||| Sbjct 838 GCCTGTGAGGGTTTTCACAAAGATCTGCAT--CTGCT 872 >seq80270 Length=12149 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || ||||| ||||||||||| || | |||| | || || ||||| || || Sbjct 1018 GTAGATTCCTTTTGGATATTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTCCCA 959 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| || || || || | ||| ||||| || |||||| ||| Sbjct 958 GCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTTGCCTTC 899 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | ||||| || | ||||| | ||| || || ||||| Sbjct 898 ACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTTCCCAGTGAGAGTC 839 Query 27231 TTCACAAAGATTTGCATA 27248 |||||||||||||||||| Sbjct 838 TTCACAAAGATTTGCATA 821 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||||||||||||||| | | |||| | || || ||||| ||||| Sbjct 790 GTTGATTCCTTTTGAATATTGTAGTCAGCAAGGGTGCGTCCATCCTCAAGCTGCTTACCA 731 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| | | || || || || || | ||||| || || |||||| || Sbjct 730 GCAAAAATCAACCTTTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTG 671 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | |||||| | | |||||| || || || |||| ||||| || || ||| Sbjct 670 ACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTCTTGCCTGTGAGGGTT 611 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 610 TTCACAAAGATCTGCAT 594 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || |||| || | ||||| || || || || || |||||||| |||||||| || Sbjct 1276 CCACCACGCAGACGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCTGCA 1217 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| | |||| || | ||||||||| || | ||||| | ||| ||||| || || Sbjct 1216 AGAGTTCTTC-CGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGG 1158 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| || || |||||| ||| | | || | || || | | ||| || Sbjct 1157 AATACCCTCCTTGTCCTGGATCTTTGCTTTAACATTGTCAATTGTATCAGAGCTTTCCAC 1098 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | || || ||||| || ||||||||||||||||| Sbjct 1097 CTCCAATGTGATTGTCTTCCCAGTCAGGGTCTTCACAAAGATTTGCAT 1050 >seq58370 Length=11695 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || ||||| ||||||||||| || | |||| | || || ||||| || || Sbjct 2355 GTAGATTCCTTTTGGATATTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTCCCA 2296 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| || || || || | ||| ||||| || |||||| ||| Sbjct 2295 GCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTTGCCTTC 2236 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | ||||| || | ||||| | ||| || || ||||| Sbjct 2235 ACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTTCCCAGTGAGAGTC 2176 Query 27231 TTCACAAAGATTTGCATA 27248 |||||||||||||||||| Sbjct 2175 TTCACAAAGATTTGCATA 2158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424324213058064