Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq65171 98.7 1e-15 seq71799 95.1 2e-14 seq53411 89.7 6e-13 >seq65171 Length=12567 Score = 98.7 bits (108), Expect = 1e-15 Identities = 262/392 (67%), Gaps = 14/392 (4%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| || |||||||| || | ||| |||||||| || || || |||||||||||| | Sbjct 756 AAACCCGTCCATCTCCGTCAATAACTGATTAATAGTCTGCTCCCTCTCATCATTTCC--A 813 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| || || | | ||| | || |||||||||||||||||||| || ||||| Sbjct 814 CCTCCCATCCCCGCCCCTCTCTGCCTCCCAACCGCATCAATCTCATCAATAAACACAATG 873 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | ||| | ||| | ||||| | || | || || || ||||| || Sbjct 874 CA-GGGCGCTTTCGACTTGGCCTTCTCAAACAAGTCCCTCACTCTGGACGCTCCCACTCC 932 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGG---GACATTTGATTC 11772 ||||||| ||||||||| | | || | ||| || ||| || | || | || Sbjct 933 CACAAACAGCTCCACAAACTCCGACGCGGCACACGAGAAGAACGGCGTGCCA---GCCTC 989 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGC 11832 ||| || | || || || || ||||||||||| ||||| || ||| | || || Sbjct 990 ACCAGCAACCGCACGCGCCAGCAGGGTCTTTCCGGTACCGGGAGGGCCCACAAGCAGACA 1049 Query 11833 GCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 ||| ||| ||||| || || || || | || || | ||| | |||||||| Sbjct 1050 CCCTTTGGGAATCTTAGCTCCCAAGGCAGTGTACTTATCAGGATTCTTCAAGAAATCCAC 1109 Query 11893 AATCT-CTTCAAGTTCATCTTTGGCCGCGTCA 11923 || || || ||| | || | |||||| |||| Sbjct 1110 AACCTCCTGCAACTCCAGC-TTGGCCTGGTCA 1140 >seq71799 Length=4368 Score = 95.1 bits (104), Expect = 2e-14 Identities = 226/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATG---CCAGTCTCATTGTC 11538 ||| || ||||| | | ||||| || |||| |||||||| ||||| | | || Sbjct 2246 ATCGAGAATATCTGCCCTGTTAGTTGCTGCAA---CCACAATGATACCAGTGTTACCCTC 2302 Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | | ||||||| || |||||||| |||||||| || Sbjct 2303 AAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCTCC 2362 Query 11599 CATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 |||| |||| | | ||| || || |||||||| ||||||| || ||||| Sbjct 2363 ---ACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAAT 2419 Query 11656 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || ||| |||||| || | | ||| ||||| || || | ||||| ||||| Sbjct 2420 GCAAGGTGCATTTTCCTTAGCCTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACC 2479 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||||||||| || ||||| | | | ||| || || || ||| | |||||| Sbjct 2480 AACAAACATTTCAACAAACTCAGAACCTGAGATAGAGAAAAAAGGAACACCAGCTTCACC 2539 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || || || || || |||||||| || ||||| Sbjct 2540 AGCAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGG 2578 >seq53411 Length=6979 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/198 (70%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| || |||||||| || || | || || |||||| ||||| ||||| || || Sbjct 3137 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAGCCC 3196 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||| || | |||| | || |||||||| || ||||||||||| || ||||| || Sbjct 3197 GCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCTTCCACGCA 3256 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGG--AGCGAGACTTTGCATCAAACCATTTCATT 122847 || || || | | || || ||||| | |||| | || | |||||||| Sbjct 3257 GGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAG-----CCGTCGATCCATTTCAGG 3311 Query 122848 GCCCATTTCGCCTTCTTC 122865 ||||| | |||||| ||| Sbjct 3312 GCCCACTGCGCCTTTTTC 3329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627107050171200