Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq53411 131 2e-25 >seq53411 Length=6979 Score = 131 bits (144), Expect = 2e-25 Identities = 346/520 (67%), Gaps = 19/520 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || |||||||| | |||||| ||||| || |||||||| | | || || |||||| Sbjct 2838 TACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCATC 2897 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT--CCAATCTGTTTGAGGAGAC 129845 ||||||||||||||| | || | ||| | | || | | || || | Sbjct 2898 CAATCAAATGGGTTCTGCACAT--CATACAGCTTCCCATATCCCAACGCACCCAGCAGCC 2955 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 ||| | |||| |||| ||||||| | |||| || |||||| || | | | | Sbjct 2956 TATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCGC 3015 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | || | |||||| ||| |||| || |||| ||||| || || | ||||||||| | | Sbjct 3016 ACGGTAACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCACGATTGACT 3075 Query 129966 GAATGGTCTCC---GTGCCAGGTCTATT--GCGCAAAGTCTTGAAGAGTTCCACGGCAAA 130020 | | |||| ||| || | || | | | | | || || |||| | || Sbjct 3076 TCACGCGCTCCTCCGTG--AGCTTCATCCGGAGGAGGGAGTAGAGAAGG--CACG-CGAA 3130 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || |||||| || || || || ||||| | || ||||||||| |||||| ||||| Sbjct 3131 GTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCAT 3190 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 || || ||||| || | ||| || ||||| || || || |||||||||||||| || Sbjct 3191 CAGCCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCTTC 3250 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATCAAACCACT 130199 ||| || ||||| || | || ||||| || |||| | | | || | ||| | Sbjct 3251 CACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGC----CGTCGATCCATT 3306 Query 130200 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 130239 ||| |||||||||||||||||| ||| || |||| ||| Sbjct 3307 TCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGT 3346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617524384098320