Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq71799 127 2e-24 seq53411 104 3e-17 seq65171 91.5 2e-13 >seq71799 Length=4368 Score = 127 bits (140), Expect = 2e-24 Identities = 309/462 (67%), Gaps = 12/462 (3%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 ||| || ||||| | | || || || || | |||| ||||| || | | ||||| Sbjct 2246 ATCGAGAATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGTGTTACCCTCAAA 2305 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| ||||||||||| || |||| || ||||| | ||||||||| || Sbjct 2306 ACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCT---CC 2362 Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 |||| |||| | | ||| ||| || |||||||| ||||||| || || ||||| Sbjct 2363 ACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 2422 Query 9733 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 ||| |||||| ||| |||| ||| ||||| || || || || || |||||| Sbjct 2423 AGGTGCATTTTCCTTAGC--CTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACCA 2480 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849 |||||||| || ||||| | | | | | || | || || || ||| || |||||| Sbjct 2481 ACAAACATTTCAACAAACTCAGAACCTG-AGATAGAGAAAAAAGGAACACCAGCTTCACC 2539 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 ||||| || || || |||||||| || || ||||| || | || || | || Sbjct 2540 AGCAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGGAGGGCCAACAAGAAGAACCCC 2599 Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 9969 | ||||| || ||| || | |||||||||| | ||| | || ||||| | Sbjct 2600 TTTAGGAATGCGAGCTCCAACAGCAGTGAATCTCTCAGGCTTCTTTAAGAACTCCACCAC 2659 Query 9970 TTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 ||| | || || | ||||| | || | ||| ||||||| Sbjct 2660 TTCCACAAAATCCTGCTTGGCTTCATCCACCCCAGCAACATC 2701 >seq53411 Length=6979 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || || |||||| || | || || || || || || || ||||||||||| || |||| Sbjct 3283 TTCGCGGAGCGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTC 3224 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| || | |||||| || ||||| || || ||||| ||||| |||||| |||||| Sbjct 3223 TGCGCGATATTTTGGCTAAAAAAGCGCGGGCTGATGCCGGGTCTGACCTTCTCGAACGAG 3164 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 | ||||| || || || || |||||| Sbjct 3163 TTGATCTCGCGAGATGAAGGCCTCCAC 3137 >seq65171 Length=12567 Score = 91.5 bits (100), Expect = 2e-13 Identities = 271/412 (66%), Gaps = 12/412 (3%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| || |||||||| ||||| | || |||||||| || |||| |||||||| | Sbjct 756 AAACCCGTCCATCTCCGTCAATAACTGATTAATAGTCTGCTCCCTCTCATCATTTCCA-- 813 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| || || | | ||| | || || ||||||||||||||||| || || ||| Sbjct 814 CCTCCCATCCCCGCCCCTCTCTGCCTCCCAACCGCATCAATCTCATCAATAAACACAATG 873 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || || ||||| | || ||||| | |||| ||| || | || ||||| Sbjct 874 CAGGG--CGCTTTCGACTTGGCCTTCTCAAACAAGTCCC--TCACTCTGGACGCTCCCAC 929 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 || ||||||| ||||||||| | | |||| ||| || ||| || || || Sbjct 930 TCCCACAAACAGCTCCACAAACTCCGACGCGGCACACGAGAAGAACGGCGTGCCAGCCTC 989 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 ||| |||| || || || || || ||||| || ||||| || ||| | || || Sbjct 990 ACCAGCAACCGCACGCGCCAGCAGGGTCTTTCCGGTACCGGGAGGGCCCACAAGCAGACA 1049 Query 9907 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 ||| |||||||| || || || ||| | ||||| | ||| | |||||||| Sbjct 1050 CCCTTTGGGAATCTTAGCTCCCAAGGCAGTGTACTTATCAGGATTCTTCAAGAAATCCAC 1109 Query 9967 AATTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAAC 10018 || || | ||| || ||||| |||| || | ||||||| |||| Sbjct 1110 AACCTCCTGCAACTCCAGCTTGGCCTGGTCAGCTCCGGCGACATCGGAAAAC 1161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582401788075280