Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq53411 149 7e-31 >seq53411 Length=6979 Score = 149 bits (164), Expect = 7e-31 Identities = 375/561 (67%), Gaps = 8/561 (1%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || | ||||||||| | |||| |||| ||||| || | || |||||| Sbjct 3694 TTCCCGATTCAGTACCCGGAGATCTGGGAAATGTACAAGAAGGCCGAGGCGTCGTTCTGG 3635 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681 ||| ||||||| | || |||| ||||| | | ||||| | || | || | Sbjct 3634 ACCGCCGAGGAGGTCGATCTCGAGCAAGACCAGCGCCACTGGGAAACCCTAACCCCCGGC 3575 Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741 ||| |||| ||||||| ||||| ||||||||||| || || || || || | Sbjct 3574 GAGAAGCACTTCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTC 3515 Query 59742 GAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTAC 59801 || ||| | | | | || ||||| |||||| | | ||||| || | |||||| Sbjct 3514 GAGAATCTCGCCGGAAGGTTCATGAAGGAGGTCCAGGTCTCGGAGGCGCGTGCCTTCTAC 3455 Query 59802 GCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAA 59860 | | ||| ||| | ||| ||||||||||||| |||| ||| | |||| | Sbjct 3454 GGCTTCCAGATCGCG-ATTGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGAC 3396 Query 59861 GTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCG 59919 | |||| || ||| ||||| | |||| ||| | ||| | || || |||| | Sbjct 3395 CTACATCAAAGACTCGGCCGAGAAATCCCGTCTCTTCAGGGCCGTCGACACCATCCCTTG 3336 Query 59920 CAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATTTGC 59977 | || |||| || | |||||| || | ||||| || || |||| | || || Sbjct 3335 C-GTCGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGGCTCGGAGACT--TTCGC 3279 Query 59978 ACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGC 60037 | || || | || || || ||||||||||| ||||||||||| || ||||| || Sbjct 3278 GGAGCGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTCTGCGC 3219 Query 60038 TATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || || ||||| |||||||| || || |||||||| |||| ||||| |||||| |||| Sbjct 3218 GATATTTTGGCTAAAAAAGCGCGGGCTGATGCCGGGTCTGACCTTCTCGAACGAGTTGAT 3159 Query 60098 TTCCCGGGACGAGGGCCTCCA 60118 || || || || |||||||| Sbjct 3158 CTCGCGAGATGAAGGCCTCCA 3138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547716946387680