Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq53395 87.8 2e-12 seq49317 87.8 2e-12 seq72704 86.0 7e-12 seq66950 86.0 7e-12 seq46152 86.0 7e-12 seq51581 82.4 8e-11 >seq53395 Length=7050 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 746 TGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 687 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 686 TGAGCTATGAAAGCA 672 >seq49317 Length=6604 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 5029 CTGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 5088 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 5089 CTGAGCTATGAAAGC 5103 >seq72704 Length=7414 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 5051 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4992 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 4991 TGAGCTATGAAAGC 4978 >seq66950 Length=14305 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 14130 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 14071 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 14070 TGAGCTACGAGAGC 14057 >seq46152 Length=8751 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2771 TGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2712 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 2711 TGAGCTATGAAAGC 2698 >seq51581 Length=2660 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 502 CTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 561 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 562 CTGAGCTACGAGAGC 576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546410073955600