Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq87489 123 3e-23 seq68360 96.9 4e-15 seq112910 95.1 2e-14 seq54946 82.4 1e-10 >seq87489 Length=4426 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 183789 TATATGAATTTCTAGCAGAATCAAGACATGCACAACTATCACTGAATCTGGCAATGCTAG 183848 ||||||| | ||| || |||| | ||||| ||| |||| || | | | || ||| ||| Sbjct 31 TATATGAGATCCTAACAACATCATGGCATGCTCAATTATCTCTTATTTTAGCTATGTTAG 90 Query 183849 GATCTATCAGTATCATAGTTTCACATCATATGTATGCAATGCCACCTTATCCATATCTTG 183908 ||||| | | || || || | || ||||||||| | ||||| | |||||||||||| | Sbjct 91 GATCTTTAACCATTATTGTAGCTCACCATATGTATACGATGCCCCTTTATCCATATCTAG 150 Query 183909 GTATTGAATATCCAACAGTAGTAGGATTATTCACCCATCATATGTGGATAGGTGGTTTTC 183968 || ||| ||| ||| | | ||| ||||| || ||||||||||| ||||| |||| Sbjct 151 CTACTGACTATGGTACACAACTTTCATTGTTCACACACCATATGTGGATTGGTGGATTTC 210 Query 183969 TTATTGTGGGTGCATCAGCACATGCTTCAATTGCTATGATAAG 184011 | || || ||||| |||||||| | ||| |||| |||| Sbjct 211 TCATAGTTGGTGCTGTTGCACATGCAGCCATTTTTATGGTAAG 253 >seq68360 Length=8583 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/213 (71%), Gaps = 11/213 (5%) Strand=Plus/Minus Query 182485 AATGTCTCACGCCGTTAAAATATATGATACTTGC----ATTGGATGCACACAATGTGTGA 182540 |||||| || | || || || |||| ||||||| || || || || ||| |||| Sbjct 6753 AATGTCACATTCAGTGAAGATTTATGCTACTTGCGTGTATAGGGTGTACTAAATTTGTGC 6694 Query 182541 AGGCTTGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAA 182600 ||| ||| ||||| |||||||| | ||||||| || || ||||| ||||||| Sbjct 6693 GAGCTAA-CCA----ATGTAATAGAAATGATAGCTTGGGACGGATGTAAAGCTAAGCAAA 6639 Query 182601 TTGCTTCCT--CACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATG 182658 | |||| | || ||| ||||| ||||| || ||||||||||||||| | | | Sbjct 6638 TCGCTTATATGCTCCATGAATAGAGGACTGTGTCGGTTGTAAGAGATGTGAATCCACCTT 6579 Query 182659 TCCTACAGACTTTTTAAGTATTCGTGTTTACTT 182691 || ||||| ||||| ||| |||| ||||| || Sbjct 6578 TCAAACAGATTTTTTGAGTGTTCGCGTTTATTT 6546 >seq112910 Length=6904 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 190322 GGTTACAAGTTTGGACAAGAAGAAGAAACATACAACATAGTAGCTGCTCATGGTTACTTT 190381 ||||||| || | ||||| |||||||| || || || ||||| ||||||||||| ||| Sbjct 4216 GGTTACAGATTCGATCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTT 4275 Query 190382 GGTAGACTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTTTACACTTCTTCTTA 190441 || || | |||||| | |||||| || ||||| || | |||||||||||||||| Sbjct 4276 GGCCGATTGATCTTCTAATATGCTAGTTTTAACAATTCTCGTTCTTTACACTTCTTCTTA 4335 Query 190442 GCAGTATTCCCTGTA 190456 || | | |||||| Sbjct 4336 GCTGCTTGGCCTGTA 4350 >seq54946 Length=5514 Score = 82.4 bits (90), Expect = 1e-10 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 185039 TGGTATGGATTAGCAACTGCACATGACTTTGAGAGTCATGACAATATGACAGAAGAGAAG 185098 |||| ||| | || || ||||||||| | |||| |||||| |||| | || || | | Sbjct 2944 TGGTTTGGTATTGCTACCGCACATGACCTCGAGAATCATGATGATATATCTGAGGA-ACG 3002 Query 185099 T-TATATCAAAAATTATTTGCTACACACTTTGGTCATCTTGCAATTA-TCTTTCTATGGG 185156 | | ||||| || | |||||| | || || || | |||| || | ||||| ||| Sbjct 3003 TCTTTATCAGAATATTTTTGCTTC----TTCGGGCAATTAGCAAGTAATTTTTCTGTGGA 3058 Query 185157 TTGCAGGTAATTTAATTCATATAGCATGGCAAGGTAACTTTGAACAGTTTGTAGCAGACC 185216 | | || ||| | ||||| |||| ||||||| | | ||||| | ||| || | Sbjct 3059 CTTCTGGAAATCTGTTTCATGTAGCTTGGCAAGTTTATTTTGAGGCATGGGTACAGGATC 3118 Query 185217 CACAACATGTGATACCTATAGCACATAGAATATGGGATCCTCATTTTG-GTCAA 185269 | |||||| | |||||| || || ||| |||||||||||||||| ||||| Sbjct 3119 CTTTACATGTAAGACCTATTGCTCACGCAATTTGGGATCCTCATTTTGAGTCAA 3172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630497249805520