Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq76293 98.7 7e-16 seq66408 93.3 3e-14 seq80270 86.0 4e-12 seq62381 82.4 5e-11 >seq76293 Length=4593 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||||||||| ||| | || |||||| ||||| | || || |||||| | Sbjct 109 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 168 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| ||||| ||| || ||||||||||| |||| || Sbjct 169 AGACACAATTGATAAT--GTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGAC 226 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || ||||| ||||| || | || |||| | | || | |||||| Sbjct 227 CAGCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTAC 286 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || |||||| ||| |||||||||| | ||| | ||||| || Sbjct 287 AACATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGG 336 >seq66408 Length=4853 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| || || ||||||||||| || || | || || |||||| | Sbjct 412 AATGCAGATCTTTGTAAAGACGCTTACTGGGAAGACAATCACCCTGGAGGTGGAAAGCTC 353 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || || || ||||| ||||| ||| || ||||| || ||| |||| || Sbjct 352 CGATACAATTGACAAT--GTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGAT 295 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 ||||| || | || ||||| || ||||| ||||| |||| | | | |||| | || || Sbjct 294 CAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTG-CAGACTA 236 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| ||||| || || ||||| |||||| | || ||||||| || Sbjct 235 CAACATTCAAAAGGAATCAACCTTGCACTTGGTTCTCCGACTGCGTGGTGG 185 >seq80270 Length=12149 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| |||||||| ||| | || |||||| |||||| | || || |||||| | Sbjct 1277 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 1336 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| ||||| || || ||||||||||| |||| || Sbjct 1337 AGACACAATTGATAAT--GTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCAGAC 1394 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || ||||| ||||| || | || || | | | || | |||||| Sbjct 1395 CAGCAGAGGCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGTAGGACACTGGCAGATTAC 1454 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || ||| ||| |||||||||| | ||| | ||||| || Sbjct 1455 AACATACAGAAGGAGTCAACTCTGCATTTGGTGCTCCGTCTACGTGGTGG 1504 >seq62381 Length=5639 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/228 (69%), Gaps = 9/228 (4%) Strand=Plus/Minus Query 27779 ACAATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATG 27838 |||| | || ||||||||||| ||||||| ||| || ||||| || || ||||| | Sbjct 856 ACAAAAACAATATGCAAATTTTCGTGAAAATTCTGACCGGGAAGACCATCACTATTGAGG 797 Query 27839 TCGAAAGCACCG--ACGATGTACAATCGGTCAAA--CAAAAAATAGCCGACAAAGAAGGT 27894 |||| |||| | || || ||||| |||||| ||| | || ||||||||||| Sbjct 796 TCGAGAGCAGTGATACCATCGACAAT--GTCAAAGCCAAGACCCAG--GACAAAGAAGGC 741 Query 27895 GTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGC 27954 | || | || || || | | || ||||| || || |||||||| || | | | | Sbjct 740 ATCCCTGTAGATCAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAAGATGGTAG-AAC 682 Query 27955 TTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 | | || ||||||||||||||| ||| ||| | || |||| ||| Sbjct 681 TCTTGCGGTTACAACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTG 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355351397384994