Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2078 116 3e-21 seq102053 96.9 3e-15 seq48708 96.9 3e-15 seq66408 93.3 4e-14 seq58370 86.0 5e-12 seq80270 84.2 2e-11 >seq2078 Length=2300 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || ||| || || ||||| ||||| ||||| ||||| | || || Sbjct 1919 CACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGGGTTCGGCCATCCTC 1860 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| ||||| || |||||||||||||| | ||| | | ||| |||||| | Sbjct 1859 AAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCC-T 1801 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || | | | | | ||| | | | || || |||||||| || | |||||| | | Sbjct 1800 GAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCT 1741 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || || || ||||| || || |||||||||| Sbjct 1740 TGCCGGTGAGGGTTTTCACGAAAATTTGCATCT 1708 >seq102053 Length=8183 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| ||||| || | Sbjct 4337 GCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCC 4396 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || |||||||| || || || || || ||||||||||| | || | || ||| || Sbjct 4397 GTCCTCGAGCTGTTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 4456 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| || || | | | | || ||| |||||||| |||| ||||| Sbjct 4457 GTCTTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCCACCTCCAGAGTGAT 4516 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGCCG 39294 | || ||||| || ||||| || ||||| |||||||| ||||| Sbjct 4517 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTGGCGCCG 4562 >seq48708 Length=2547 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || || ||| ||| || || || || || ||||| || || || | Sbjct 305 GCGGAGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCC 246 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | || | || ||| || Sbjct 245 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 186 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || |||| ||| | | | || ||| |||||||| || | |||| Sbjct 185 GTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGA 127 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGCCG 39294 | | || ||||| || ||||| || ||||| ||||| ||||| || Sbjct 126 TGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATGGTTACGGCG 80 >seq66408 Length=4853 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| ||||| ||||| ||||| || || | || || ||||||||||| |||||| Sbjct 449 TCCTTTTGGATATTGTAATCAGCAAGGGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAAT 508 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || || | |||||| || | ||| | || ||| |||||| ||| || |||| | Sbjct 509 ATGAGCCTCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTA 568 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | |||||| ||| || || | ||||| | || || || || || |||||| Sbjct 569 TCGATCGTATCAGAACTCTCAACCTCTAATGTGATGGTCTTCCCTGTGAGAGTCTTAACA 628 Query 39274 AAGATTTGCAT 39284 ||||| ||||| Sbjct 629 AAGATCTGCAT 639 >seq58370 Length=11695 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||| || || || || || || || || ||||| ||||| || || | Sbjct 2601 CGCAACACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCTGCAAGAGTGCGACCA 2542 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || |||||||| || ||||| || || | ||||||||| | || | || ||| ||| Sbjct 2541 TCCTCTAGCTGTTTCCCTGCAAAAATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTG 2482 Query 39190 TCCATGATTTTCTGT-TTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| | | || |||| | | | ||||| ||| || |||| ||||| Sbjct 2481 TCC-TGAATCTTTGCCTTGACATTGTCAATTGTATCAGAACTCTCAACCTCCAAGGTGAT 2423 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || || || || |||||||||||||| Sbjct 2422 TGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 2387 >seq80270 Length=12149 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| || || || || ||||| |||| | |||| || | |||||| || ||||| Sbjct 1240 TCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAG 1181 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || || | |||||| || | ||| | | ||| |||||| ||| || || || | | | Sbjct 1180 ATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTT-TGCTTTAACATT 1122 Query 39214 GCCACC-GTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTT 39269 | || ||||| ||| ||||| |||| ||||| | || || ||||| || || Sbjct 1121 GTCAATTGTATCAGAGCTT---TCCACCTCCAATGTGATTGTCTTCCCAGTCAGGGTCTT 1065 Query 39270 AACAAAGATTTGCAT 39284 |||||||||||||| Sbjct 1064 CACAAAGATTTGCAT 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428928791579486