Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq46178 109 4e-19 seq102053 107 1e-18 seq66408 98.7 7e-16 seq2078 96.9 2e-15 seq47958 91.5 1e-13 seq80270 89.7 3e-13 seq76293 86.0 4e-12 seq67744 84.2 1e-11 seq57720 84.2 1e-11 >seq46178 Length=11793 Score = 109 bits (120), Expect = 4e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| ||||| || || ||||||||||| || || | Sbjct 2576 AAGATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACCATCACTCTCGAGGTGGAGAGC 2635 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || || ||||| ||||| | || || || Sbjct 2636 AGCGACACCATCGACAATGTCAAGGC-CAAGATCCAAGACAAGGAAGGCATCCCTCCTGA 2694 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || ||||| || || || || |||| ||||| || | ||| || Sbjct 2695 TCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGACTA 2754 Query 23787 CAACATACAAAAAG 23800 |||||| || |||| Sbjct 2755 CAACATCCAGAAAG 2768 >seq102053 Length=8183 Score = 107 bits (118), Expect = 1e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| ||||| || ||||||||||| || || || ||| Sbjct 4555 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTGGAGGTGGAGTCC 4496 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || || ||||| || || | ||||| || Sbjct 4495 TCCGACACCATCGACAATGTGAAGGC-CAAGATCCAAGACAAGGAGGGCATCCCGCCGGA 4437 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| | || || ||||| ||||| || || |||| ||||| | | ||| || Sbjct 4436 CCAGCAGCGCCTCATCTTCGCCGGGAAACAGCTCGAGGACGGCCGCACACTCGCCGACTA 4377 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 4376 CAACATCCAGAAGGAGTCGAC 4356 >seq66408 Length=4853 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| ||||| ||||| | | Sbjct 867 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 808 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| |||| | | ||||| || || | || || || || Sbjct 807 GACACTATTGACAATGTCAAAGCAAAGA-TCCAAGACAAGGAGGGAATTCCCCCGGACCA 749 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || || || | || || | | || ||||| Sbjct 748 ACAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGGCGTACACTCGCTGACTACAA 689 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || ||||||||||| | || || ||| Sbjct 688 CATTCAGAAAGAGTCCACTCTCCACTTGGTT 658 >seq2078 Length=2300 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||||||||| || || || ||||| || || || || || | Sbjct 1710 ATGCAAATTTTCGTGAAAACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 1769 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || ||| ||||| || ||| | || || || || Sbjct 1770 GACACCATTGACAACGTTAAGGC-CAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCA 1828 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || || || || | || || | | |||||||| Sbjct 1829 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTTGCTGATTACAA 1888 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||| || | ||||| || Sbjct 1889 TATCCAGAAGGAGTCGACCCTCCATTTGGT 1918 >seq47958 Length=6020 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 || || ||||| | || || ||||||||| | || || |||||||| || ||| ||||| Sbjct 5651 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 5592 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | | | ||| | | ||||||||||| ||||| ||||| || | || |||||||| Sbjct 5591 GATGGAAGAACTCTTGCAGATTACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTA 5532 Query 23824 AGGTTGCGAGGAGGA 23838 ||| || | || ||| Sbjct 5531 AGGCTGAGGGGTGGA 5517 >seq80270 Length=12149 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| ||||| ||||| | | Sbjct 594 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 653 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | ||| || ||||| || || | || ||||| || Sbjct 654 GACACTATTGACAATGTCAAGGC-AAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCA 712 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || ||||| || || || || || || | |||||| | | || ||||| Sbjct 713 GCAAAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGACGCACCCTTGCTGACTACAA 772 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 773 TATTCAAAAGGAATCAAC 790 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| ||||| || || || | || || || | Sbjct 1506 ATGCAGATCTTTGTGAAGACCCTCACTGGAAAGACCATAACCTTGGAGGTAGAGAGTTCT 1565 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| |||| | || ||||| || || | || || || || Sbjct 1566 GATACAATTGATAATGTGAAAGCAAAGA-TTCAGGACAAGGAGGGCATTCCTCCGGACCA 1624 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | |||||||| || || || || ||||| | || ||| ||| |||||||| Sbjct 1625 GCAGAGGCTCATATTTGCTGGTAAGCAGCTTGAAGATGGTCGGACTCTAGCAGATTACAA 1684 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 1685 CATTCAAAAGGAGTCAAC 1702 >seq76293 Length=4593 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || || | || || ||||| || ||| | ||||| || | | Sbjct 109 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 168 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || |||| | || ||||||||||| | || ||||| | Sbjct 169 AGACACAATTGATAATGTCAAGGCAAAGA-TTCAGGACAAAGAAGGCATTCCCCCAGACC 227 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| || || || || || |||| | || | | ||||||| Sbjct 228 AGCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACA 287 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||| || |||||||| || | ||||| || Sbjct 288 ACATTCAGAAAGAGTCGACTCTGCATTTGGT 318 >seq67744 Length=10152 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || ||||| || ||||| || || | || ||||| | Sbjct 294 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 235 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||| ||| || ||||| ||| | || ||||| || Sbjct 234 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 175 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || || || || || | ||||| | | ||||||||| Sbjct 174 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAAC 115 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| |||||||| | |||||||| Sbjct 114 ATTCAAAAGGAGTCCACCCTTCATTTAGT 86 >seq57720 Length=9334 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || || || || |||||| | || ||||| | || Sbjct 7838 ATGCAGATTTTTGTGAAGACTTTGACAGGCAAGACCATCACTTTGGAGGTTGAGAGCTCG 7897 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| | || || || || ||||| | || || || || Sbjct 7898 GATACCATTGATAATGTCAAAGC-CAAGATCCAGGATAAGGAAGGGATCCCACCGGACCA 7956 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||||||||| || || || |||| || || | | |||||||| Sbjct 7957 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTGGCTGATTACAA 8016 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 8017 CATTCAGAAGGAGTCCAC 8034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337524233213576