Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq76293 91.5 1e-13 seq62381 91.5 1e-13 seq80270 82.4 6e-11 >seq76293 Length=4593 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| |||| ||| || ||||| ||||| |||||||| |||| || || || || Sbjct 319 CACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCCAGTGTCCTGCCGTCCTC 260 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 | || || || ||| | || ||||| || |||||| ||| | |||||||||||| Sbjct 259 AAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 200 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTT 101206 ||| ||| || |||| | | || |||| | | || ||| | ||||| ||| Sbjct 199 AATCTTTGCCTTGACATTATCAATTGTGTCTGAG--CTTTCCACTTCCAAAGTAATGGTT 142 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || || ||||| || || | ||||||||||||| Sbjct 141 TTCCCGGTCAAAGTCTTCACAAAAATTTGCATT 109 >seq62381 Length=5639 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/122 (77%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 || ||||||| ||| | ||| || || ||||| || |||||| || | | |||| | | Sbjct 632 CTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAACCG-CAAGAGTTCTACCA 690 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 ||||||||||| ||||| ||| | || || || ||||| ||||| || | |||||||||| Sbjct 691 TCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTACAGGGATGCCTTCTTTG 750 Query 101144 TC 101145 || Sbjct 751 TC 752 >seq80270 Length=12149 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| |||| |||||| || || || || |||||||| |||| || | ||| || Sbjct 1487 CACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCCAGTGTCCTACCATCCTC 1428 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 | || || || ||| | || ||||| || |||||| ||| | |||||||||||| Sbjct 1427 GAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 1368 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTT 101206 ||| || || |||| | | || |||| | | || ||| | ||||||||| Sbjct 1367 AATCTTCGCCTTGACATTATCAATTGTGTCTGAG--CTTTCCACTTCCAAAGTAATAGTT 1310 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || || ||||| || || | ||| ||||||||| Sbjct 1309 TTCCCTGTCAAAGTCTTCACAAAGATTTGCATT 1277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409072545269898