Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq53411 114 1e-20 >seq53411 Length=6979 Score = 114 bits (126), Expect = 1e-20 Identities = 372/573 (65%), Gaps = 5/573 (1%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAA 4606 ||||| || || || || | ||||| |||| || | |||| ||||| || || || | Sbjct 3123 CACGCGAAGTCGCAGTGGAGGCCTTCATCTC-GCGAGATCAACTCGTTCGAGAAGGTCAG 3181 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 || ||||| | || | |||||| ||||||||||| ||| || || || ||||| Sbjct 3182 ACCCGGCATCAGCCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAA 3241 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 || ||||| ||| ||| || || || | ||| | |||| | || | | | | Sbjct 3242 GATCCCTTCCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGT-CT--CCGAGCCGTC 3298 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 |||||||| | ||||| | || |||||| ||||| || || |||| | || | Sbjct 3299 GATCCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCT 3358 Query 4787 AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 || | ||| || | ||||| || || || || | || ||||| ||||| Sbjct 3359 GAAGAGACGGGATTTCTCGGCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACAT 3418 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906 || || || || || || || || ||||| || ||||| ||| | || || | || Sbjct 3419 CTCGGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGAC 3478 Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC 4966 || || || || || ||| | | | || ||| || || ||||| ||| || Sbjct 3479 CTGGACCTCCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGC 3538 Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTG 5026 || || || | || |||| || |||| || ||| | || | || ||| |||||| Sbjct 3539 GAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTG 3598 Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086 | || |||| | ||| || || || | ||||| |||||||| || || || || Sbjct 3599 GCGCTGGTCTTGCTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTT 3658 Query 5087 GTACATAGACCAAATATCAGGATACTGAATCGG 5119 |||||| ||| || || || ||||||||||| Sbjct 3659 GTACATTTCCCAGATCTCCGGGTACTGAATCGG 3691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426436375724726