Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq80815 98.7 1e-15 >seq80815 Length=8550 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || |||||||| | ||| | || || | |||| |||||| || ||| ||||| || || Sbjct 7253 CCCCCCTGATCAACATAACGAGCAGTATCATTAAAAACTCGCAGCATAGGAATGATGCCA 7312 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| |||||||||||| |||||| || ||| | || ||||| || || ||| Sbjct 7313 TTGGATGTCCCATTTGTTCCACGAATATAGCTGCCAGTGGCACGAATGTTGTGAACGGAG 7372 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || ||||| || || || || | ||| || ||||| ||||| || || Sbjct 7373 ACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTCAAGGTATCATATATG 7432 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || || || ||||| ||||| | ||| || |||||| Sbjct 7433 CCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 7474 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| | |||||| | || ||||| ||||| || |||||| | ||| | |||| | Sbjct 7598 GTTCCAGAATTAAAAAGGGTAGGAGAGGCATGAGTGAACCATCGCTGAGACATGAGATGG 7657 Query 78459 TATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAA 78517 |||||| ||| | ||||| || || | ||| || ||||| || || || | ||| | Sbjct 7658 TATGTTCTGATAACAGATTCAATATCATCCTTG-TGTATTCCAACAGCAACCCTCATTAG 7716 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 |||||||||||| || || || ||| | | || || | |||||| | || | Sbjct 7717 CATATGCTGAGGCCTCTCTACAACCTTCCCTTGAACCTTTAAGAGGTATGACCTCTCAAG 7776 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||| || |||||||| |||| || |||||| | || ||||| || Sbjct 7777 AGTCTTGAAACCAAAGTAGTCATAGTCAAAGTCCCGATCATAAATGAT 7824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693645709158080