Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq80815 125 1e-23 seq53411 102 1e-16 >seq80815 Length=8550 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || |||||||| | ||| | ||||| | |||| |||||| || ||| ||||| ||||| Sbjct 7253 CCCCCCTGATCAACATAACGAGCAGTATCATTAAAAACTCGCAGCATAGGAATGATGCCA 7312 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||||||| |||||| || ||| |||||||| || || || Sbjct 7313 TTGGATGTCCCATTTGTTCCACGAATATAGCTGCCAGTGGCACGAATGTTGTGAACGGAG 7372 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||| || || ||| ||| | |||||| ||||| || ||||| ||| Sbjct 7373 ACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTCAAGGTATCATATATG 7432 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || |||||||| ||||| | ||| || |||||| Sbjct 7433 CCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 7474 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| | |||||| | |||||||| ||||||||||||||| | ||| | |||| | Sbjct 7598 GTTCCAGAATTAAAAAGGGTAGGAGAGGCATGAGTGAACCATCGCTGAGACATGAGATGG 7657 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||| ||||| | ||| ||||| | ||| || ||||| ||||| || | ||| | Sbjct 7658 TATGTTCTGATAACAGATTCAATATCATCCTTG-TGTATTCCAACAGCAACCCTCATTAG 7716 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 |||||||||||| | |||||| ||| | | || || | |||||| | || | Sbjct 7717 CATATGCTGAGGCCTCTCTACAACCTTCCCTTGAACCTTTAAGAGGTATGACCTCTCAAG 7776 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||| || |||||||| |||| || |||||| | || ||||| || Sbjct 7777 AGTCTTGAAACCAAAGTAGTCATAGTCAAAGTCCCGATCATAAATGAT 7824 >seq53411 Length=6979 Score = 102 bits (112), Expect = 1e-16 Identities = 372/578 (64%), Gaps = 6/578 (1%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || || || || || ||||||||||||| || || ||||| || || || || Sbjct 3123 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 3182 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || ||||| || || |||||||| ||||||||||| || ||| ||| || ||||| Sbjct 3183 CCCGGCATCAGCCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAG 3242 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATC 46809 || ||||| || ||||| || || | || ||| || || | | | ||| Sbjct 3243 ATCCCTTCCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGCCGTCGATC 3302 Query 46810 CACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 46869 || | | ||||| | ||||||||| || ||||| || || || | || | ||| Sbjct 3303 CATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCTGAAG 3362 Query 46870 AGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCT 46929 ||| | ||| || | ||||| | || || || | | || || ||||| || Sbjct 3363 AGACGGGATTTCTCGGCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTCG 3422 Query 46930 GAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGT 46989 || || ||||| ||||| || ||||| || ||||| || | || || | | ||| Sbjct 3423 GAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTGG 3482 Query 46990 ACCTCTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAAA 47048 ||||| | || | | ||| | | | |||||| || || || || || || || Sbjct 3483 ACCTC-CTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAA 3541 Query 47049 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGT--CA 47106 || || | || || | || || | || || ||| || || | | ||||| | Sbjct 3542 GAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGGCG 3601 Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166 || |||| | ||| || || || || |||||||| |||||||| || || || Sbjct 3602 CTG--GTCTTGCTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTG 3659 Query 47167 TACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 ||||| | ||| || || | || || ||||| || || Sbjct 3660 TACATTTCCCAGATCTCCGGGTACTGAATCGGGAACAT 3697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711884408039040