Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20iinumae_20[genbank_20GCA_5F000511975.1_202013-12-06] 117,822 sequences; 199,627,509 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq112910 147 3e-30 seq72447 86.0 8e-12 >seq112910 Length=6904 Score = 147 bits (162), Expect = 3e-30 Identities = 126/156 (81%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912 ||||||| |||| |||||| ||||| ||||| || || || || |||||||| || ||| Sbjct 4216 GGTTACAGATTCGATCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTT 4275 Query 183913 GGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTT 183972 || || |||||||| | |||||| |||||||||||||||||| | ||||||||| | Sbjct 4276 GGCCGATTGATCTTCTAATATGCTAGTTTTAACAATTCTCGTTCTTTACACTTCTTCTTA 4335 Query 183973 GCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCT 184008 ||||||||||| || || || |||||||| || ||| Sbjct 4336 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCT 4371 >seq72447 Length=2500 Score = 86.0 bits (94), Expect = 8e-12 Identities = 125/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 171005 TCTTG-ATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGCTT 171063 ||||| || | ||||| | |||||| |||| || |||||| || | ||||| || | Sbjct 1919 TCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGGGCAT 1978 Query 171064 GTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTTCC 171123 | || |||||||| || || |||| ||||| ||||| || || ||| || |||| Sbjct 1979 GCTCCACCTGTGCAGGAAAGATTGTAGCAGGTTCAGTTGACCAGTCTGATGGTTCCTTCC 2038 Query 171124 TTGATGATGATCAGATTGAATCAGGTTTCATT-CTGACCTGCGTCTCATATCC 171175 ||||||| | || | |||| ||| || || |||||||| |||||||| || Sbjct 2039 TTGATGACAACCA-AATGAAGGAGGGTTATTTGCTGACCTGTGTCTCATACCC 2090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621154230266640