Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4302 123 5e-23 seq136723 102 2e-16 seq178200 100 6e-16 seq159713 100 6e-16 seq124827 100 6e-16 seq119192 100 6e-16 seq198732 98.7 2e-15 seq182384 98.7 2e-15 seq159441 98.7 2e-15 seq147207 98.7 2e-15 seq123158 98.7 2e-15 seq117099 98.7 2e-15 seq115706 93.3 9e-14 seq130681 89.7 1e-12 seq8422 89.7 1e-12 seq116452 87.8 4e-12 >seq4302 Length=1545 Score = 123 bits (136), Expect = 5e-23 Identities = 335/500 (67%), Gaps = 17/500 (3%) Strand=Plus/Minus Query 230138 AGTGGGCTCAGAAATGGCTAGAAC-CTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGG 230196 ||||||| | ||||||| | || || | | | | || || ||||| |||| |||| Sbjct 1540 AGTGGGCCCTGAAATGGATCGACGGCTCGGAGA-CTTTCGCGGAGCGGATCGTGGCCTTC 1482 Query 230197 GTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAAC 230256 | || || || || || | || || || || |||||||| || |||||||| || Sbjct 1481 GCCTGCGTGGAGGGGATCTTCTTCTCGGGAAGCTTCTGCGCGATATTTTGGCT----AAA 1426 Query 230257 AAAG----GTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGG 230312 |||| | ||||||| || || | || |||||||| ||| || || || || Sbjct 1425 AAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCGCGAGATGAAGG 1366 Query 230313 TCTCCATCAACAGTTCGGCGAGC-TTATGTATTCAAAGCTCCAGAACAAGCTACCATTCG 230371 ||||| | |||| || || || | || || |||| || ||||| | | Sbjct 1365 CCTCCACTGCGACTTCG-CGTGCCTTCTCTACTCCCTCCTCCGGATGAAGCTCACCGAGG 1307 Query 230372 AGACGGTCAAACAAATCATTACAGAA-GCAGTTGAAAACGAAAAGGAGTTCATTTGTGAC 230430 || || || |||| | | ||| || ||||| | || | ||||||| | || ||| Sbjct 1306 AGCGCGTGAAGTCAATCGTG-CGGAACGCGGTTGACATAGAGAGGGAGTTCGTCTGCGAC 1248 Query 230431 GCTATTCCATGTCGCCTTA-TTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATT 230489 || | || || ||||||| |||| ||||||| ||| || ||||| ||||||||||| || Sbjct 1247 GCGTTACCGTG-CGCCTTAGTTGGGATGAACGGTGATCTGATGGGTCAGTACATCGAGTT 1189 Query 230490 CGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCC 230549 ||| || || | | | | ||| | || || | |||| |||| | ||||||| Sbjct 1188 CGTCGCTGATAGGCTGCTGGGTGCGTTGGGATATGGGAAACTGTATGATGTGCAGAACCC 1129 Query 230550 CTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 |||| | |||||||| ||| ||||| ||||||||||| ||||| || ||| | || Sbjct 1128 ATTTGATTGGATGGAGCTGATTAGTCTTCAGGGGAAGACCAATTTCTTTGAGAAGAGAGT 1069 Query 230610 CAGTGACTATCAG-AGGCCT 230628 | || || ||| |||||| Sbjct 1068 TGGGGAGTACCAGAAGGCCT 1049 >seq136723 Length=806 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 604 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 545 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 544 GCCCCACGGTGGGC 531 >seq178200 Length=4543 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 4217 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4276 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 4277 CCCCACGGTGGGC 4289 >seq159713 Length=11446 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 10739 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10798 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 10799 CCCCACGGTGGGC 10811 >seq124827 Length=739 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 364 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 305 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 304 CCCCACGGTGGGC 292 >seq119192 Length=2041 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 502 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 443 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 442 CCCCACGGTGGGC 430 >seq198732 Length=796 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 476 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 417 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 416 CCCACGGTGGGC 405 >seq182384 Length=732 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 578 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 519 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 518 CCCACGGTGGGC 507 >seq159441 Length=9272 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3682 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3741 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3742 CCCACGGTGGGC 3753 >seq147207 Length=8213 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1149 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1090 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1089 CCCACGGTGGGC 1078 >seq123158 Length=738 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 72 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12 CCCACGGTGGGC 1 >seq117099 Length=9298 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 8382 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8323 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8322 CCCACGGTGGGC 8311 >seq115706 Length=3937 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3870 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3929 Query 165770 CCCACG 165775 |||||| Sbjct 3930 CCCACG 3935 >seq130681 Length=569 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||| |||||||||| Sbjct 568 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAGC 509 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 508 CCCTCGGTGGGC 497 >seq8422 Length=1185 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||| |||||||||| Sbjct 75 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAGC 16 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 15 CCCTCGGTGGGC 4 >seq116452 Length=1990 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||||||||||| |||||||||| || || |||| || ||||||| ||||||||||| Sbjct 1 CCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAGCC 60 Query 165771 CCACGATGGGC 165781 || || ||||| Sbjct 61 CCTCGGTGGGC 71 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1054909700169120