Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq55328 107 2e-18 seq149362 87.8 1e-12 seq135156 82.4 6e-11 seq122442 82.4 6e-11 >seq55328 Length=456 Score = 107 bits (118), Expect = 2e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 ||||||||| ||||| |||||||| |||||||||||||||||| | |||| | || || Sbjct 9 AGATCAACAGAGACTGATCTTTGCTGGCAAACAATTGGAAGATGGGAGAACTCTTGCGGA 68 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||| || ||||||| || ||||||||| ||||||| Sbjct 69 TTACAACATCTAAAAGGAGTCGACTCTTCACTTGGTGTT 107 >seq149362 Length=6446 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25108 ATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 25167 || ||||| |||||| || || || ||| | ||| |||||| || || || |||| Sbjct 2045 ATGTCAAGGCAAAAATCCAGGACAAGGAGGGTATCCCCCCAGATCAGCAGAGGCTCATCT 2104 Query 25168 TTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAAT 25227 |||| || ||||| |||||||| | |||| | || || ||||| ||||||||||||| Sbjct 2105 TTGCAGGTAAACAGTTGGAAGACGGAAGAACTCTTGCAGACTACAACATTCAAAAGGAAT 2164 Query 25228 CTACTCTTCACATGGT 25243 |||| | ||| |||| Sbjct 2165 CTACCTTGCACTTGGT 2180 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 |||||| || || || |||||||| |||||||| | || ||| | || | ||||| Sbjct 1629 AGATCAGCAGAGGCTCATCTTTGCCGGCAAACAGCTAGAGGATGGCCGCACCCTTGCCGA 1688 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| ||||| |||||||| |||||||||||| ||||| | || |||| || || Sbjct 1689 TTATAATATCCAAAAGGAGTCTACTCTTCACCTGGTGCTCCGTCTACGTGGTGG 1742 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || || ||||| || ||||||||||| ||| |||| | | Sbjct 2199 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 2258 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | ||||| ||| ||| || |||||||| | ||| ||| || Sbjct 2259 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 2318 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || || || ||||| || || || | || || || || |||| |||||||| Sbjct 2319 GCAGAGGCTCATTTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 2378 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 ||||| || || || ||||| || ||||| | || |||| || ||| Sbjct 2379 CATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGGG 2427 >seq135156 Length=1536 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 25147 TAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCG 25206 ||||||| || || || |||||||| || ||||| ||||| ||| | |||| | || | Sbjct 1212 TAGATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGATGGAAGAACTCTTGCAG 1153 Query 25207 ATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||| |||||||||||||| || | ||| |||| | || | || ||||| Sbjct 1152 ATTACAACATTCAAAAGGAATCAACATTGCACTTGGTTCTCCGGCTGCGTGGAGG 1098 >seq122442 Length=1060 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| || || | ||| ||||| || ||| | |||||||| || || || ||||| Sbjct 868 GATAAGGAGGGAATTCCCCCGGATCAGCAGAGATTGATCTTTGCCGGTAAGCAGTTGGAG 809 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || || |||||||||||||||| || ||||| || || |||||| ||||| | Sbjct 808 GACGGCAGGACCCTGGCCGATTACAATATCCAGAAGGAGTCGACCCTTCACTTGGTGCTC 749 Query 25248 CGATT 25252 ||||| Sbjct 748 CGATT 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409720263851936