Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq161123 145 1e-29 seq16096 136 6e-27 seq149362 123 4e-23 seq134381 118 2e-21 seq210190 109 8e-19 seq211369 104 4e-17 seq210616 100 4e-16 seq29583 98.7 1e-15 seq20564 95.1 2e-14 seq204338 86.0 9e-12 >seq161123 Length=4290 Score = 145 bits (160), Expect = 1e-29 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAA 124596 ||||||||| ||| | ||||| | ||||| |||||||| ||| | || | ||| || Sbjct 2551 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 2492 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || |||||| |||| | || ||||||||| || |||||||| || || || || | Sbjct 2491 A-GACACAATTGATAATGTCAAGGCGAAAATTCAGGACAAAGAAGGCATTCCCCCAGACC 2433 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || ||||||||||| || | |||||| || | ||| | | |||||| | Sbjct 2432 AGCAGAGGCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGTAGGACACTGGCAGATTACA 2373 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || || || || |||||| |||||||||| | ||| |||| ||||| || Sbjct 2372 ACATACAGAAGGAGTCAACTCTGCATTTGGTGCTCCGTCTACGTGGTGGGAT 2321 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || |||||||| ||||| || | ||| ||||| | Sbjct 3234 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 3175 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || ||||| || || || || || || || || Sbjct 3174 GACACTATTGACAATGTCAAGGCAAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCAG 3115 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || ||||| || || || | ||||| | |||||| | | || || || Sbjct 3114 CAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACACTTGCTGACTACAAC 3055 Query 124719 ATTCAAAAAGAATCAAC 124735 ||||||||||| || || Sbjct 3054 ATTCAAAAAGAGTCCAC 3038 >seq16096 Length=889 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || |||||||| || ||| | || | ||| | Sbjct 367 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 426 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | ||| |||||||| ||||| || ||||| || || || || Sbjct 427 GACACCATTGATAATGTGAAAGCTAAAATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 486 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||||||||| || || | |||||| | | ||| | | ||| |||||| Sbjct 487 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAAT 546 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || ||| |||| ||||| | ||| | || |||||||| Sbjct 547 ATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGCGGTGGTAT 596 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || || || || || | ||| ||||| Sbjct 139 ATGCAAATCTTTGTCAAGACCCTTACCGGAAAGACAATCACCTTGGAGGTTGAAAGTTCA 198 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| |||| | || || ||||| || || || || || || || || || Sbjct 199 GATACAATTGATAATGTCAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 258 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| ||||||||||| ||||| |||||||| |||| || | | || || ||| Sbjct 259 CAGAGGCTCATTTTTGCAGGGAAACAGCTAGAGGATGGTCGCACTCTTGCTGACTACAAT 318 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||||||| | || ||||| || ||| | || ||||| || Sbjct 319 ATTCAGAAGGAATCAACTCTTCACTTGGTGTTGCGTCTCCGTGGTGGCAT 368 >seq149362 Length=6446 Score = 123 bits (136), Expect = 4e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAA 124596 ||||||||| ||| | ||||| | || || ||||| || ||| | || | ||| || Sbjct 2199 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 2258 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || |||||| ||| | || || ||||| || |||||||| || || || || | Sbjct 2259 A-GACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACC 2317 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| |||||||||||||| || | ||||| | | ||| | | |||||| | Sbjct 2318 AGCAGAGGCTCATTTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACA 2377 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||||| ||||| || ||| |||||||||| | ||| |||| ||||| || Sbjct 2378 ACATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGGGAT 2429 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || ||||| || || || || | ||| |||| | Sbjct 1516 ATGCAGATCTTTGTTAAGACTCTCACAGGGAAGACCATCACATTGGAGGTTGAGAGTTCT 1575 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| |||| | || || || || || || || || ||||| || ||||| Sbjct 1576 GATACAATTGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATACCCCCAGATCAG 1635 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || ||||| |||||||| | || || | | ||||||||| Sbjct 1636 CAGAGGCTCATCTTTGCCGGCAAACAGCTAGAGGATGGCCGCACCCTTGCCGATTATAAT 1695 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || ||| | || |||| | ||| |||| ||||| || Sbjct 1696 ATCCAAAAGGAGTCTACTCTTCACCTGGTGCTCCGTCTACGTGGTGGAAT 1745 Score = 100 bits (110), Expect = 4e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || |||||||| || || || | ||| ||||| | Sbjct 1288 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 1347 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || || ||||| || || || || || || || ||| Sbjct 1348 GACACTATTGACAATGTCAAAGCAAAGATCCAAGACAAGGAGGGAATTCCCCCGGACCAA 1407 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || ||||| || || || | |||||| | || ||| | | || || || Sbjct 1408 CAAAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGGACACTCGCTGACTACAAC 1467 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || |||||||| || ||| | ||||||||| Sbjct 1468 ATCCAAAAAGAGTCCACTCTCCATTTGGTT 1497 >seq134381 Length=6558 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| | ||| | ||||| | || ||||| || || || | ||| | || ||| Sbjct 4106 ATGCAGGTTTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTCGAGGTAGAGAGCTC- 4048 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| || ||||||||||| || ||||| || || ||||| Sbjct 4047 TGATACCATTGACAATGTCAAAGCCAAGATTCAAGATAAGGAGGGTATCCCGCCGGATCA 3988 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || || || ||||| || || |||||| |||| || || | |||||||| Sbjct 3987 GCAAAGGTTGATCTTCGCCGGAAAGCAGTTGGAGGATGGTCGTACTTTGGCCGATTATAA 3928 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||| || ||||| || ||| |||| | ||| | ||| | || |||||| Sbjct 3927 TATCCAGAAAGAGTCCACTCTGCACCTTGTTCTGCGTCTCCGTGGTGGT 3879 >seq210190 Length=6381 Score = 109 bits (120), Expect = 8e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| | || ||||| || || || | ||| | || ||| Sbjct 2988 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTGGAGGTGGAGAGCTC- 3046 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| || |||||||||| || ||||| || || ||||| Sbjct 3047 TGATACCATTGACAATGTCAAAGCCAAGGTTCAAGATAAGGAGGGTATCCCGCCGGATCA 3106 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || || || ||||| || || |||||| |||| || || | |||||||| Sbjct 3107 GCAAAGGTTGATCTTCGCCGGAAAGCAGTTGGAGGATGGTCGTACTTTGGCCGATTATAA 3166 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||| || || || || || |||| | ||| | ||| | || |||||| Sbjct 3167 TATCCAGAAGGAGTCTACCCTGCACCTTGTTCTTCGTCTCCGTGGTGGT 3215 >seq211369 Length=926 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || || | ||| ||||| | Sbjct 346 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 405 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | ||| ||||| ||| | || ||||| || || || | ||| Sbjct 406 GACACCATTGATAATGTCAAAGCCAAAATCCAAAACAAGGAAGGCATCCCCCCATACCAA 465 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| |||||||| || || || | |||||| | || || | | || || ||| Sbjct 466 CAAAGGCTGATTTTTGCTGGTAAGCAGCTTGAGGATGGACGCACCCTTGGTGACTACAAT 525 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| |||| ||||| ||| | | | ||||| | | | || |||||||| Sbjct 526 ATTTAAAAGGAATCGACTCTTCTTCTGGTTCTCAGACTCCGCGGTGGTAT 575 >seq210616 Length=3554 Score = 100 bits (110), Expect = 4e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 124556 GACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTT 124615 ||| || || |||||||| || ||| | || | ||| ||| || ||| |||| | Sbjct 3554 GACCCTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCTGACACCATTGATAATGT 3495 Query 124616 AAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGC 124675 ||| ||||||||||| || || || || || | || || || ||| | |||||||| Sbjct 3494 GAAAGCTAAAATTCAAGACAAGGAGGGCATTCCCCAAGACCAGCAGAGGTTGATTTTTGC 3435 Query 124676 AGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAAC 124735 || || || | ||||| | | ||| | | || |||||||||||||| || || || Sbjct 3434 AGATAAGCAGCTTAAGGATGGAAGGACACTTGCTGACTATAATATTCAAAAGGAGTCCAC 3375 Query 124736 TTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| ||||| | ||| | || |||||||| Sbjct 3374 TTTGCACTTGGTGCTTCGTCTGCGCGGTGGTAT 3342 >seq29583 Length=650 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || ||||| || || || | ||| ||||| | Sbjct 264 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 323 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| ||||| |||||||| ||||| || || || || || Sbjct 324 GACACCATCGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 383 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || |||||||| ||||| || | |||||| | || || | | || || ||| Sbjct 384 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGAGGATGGACGCACCCTTGCTGACTACAAT 443 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||| ||||| ||| | || |||| Sbjct 444 ATTCAAAAGGAATCGACTCTTCACCTGGT 472 >seq20564 Length=789 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| ||||| ||||| || || || ||||| || || || |||||||| || || || | Sbjct 655 TTCAGGATAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGT 596 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 | || ||| ||||||| | | |||||||||||| |||||||| |||||| Sbjct 595 TGGAAGATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACT 546 >seq204338 Length=3429 Score = 86.0 bits (94), Expect = 9e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| ||||| ||||| || || ||||||||||| || | |||||||| || || |||| Sbjct 2921 TTCAGGATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAAT 2980 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGG 124746 | || ||| | |||| | | ||||||| | || ||||| || |||||| | || | | Sbjct 2981 TGGAAGATGGAAGAACTCTTGCAGATTATGACATCCAAAAGGAGTCAACTCTTCACCTAG 3040 Query 124747 TTTTA 124751 ||||| Sbjct 3041 TTTTA 3045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 753425485363200