Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq204338 104 3e-17 seq122442 98.7 1e-15 seq37850 98.7 1e-15 seq20564 95.1 2e-14 seq29583 89.7 8e-13 >seq204338 Length=3429 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| || || ||||| || | || | ||| || || || || | ||||||| Sbjct 3062 GTTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTCATAATCT 3003 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||||| | ||| || ||||| || || |||||||||||||| || ||||| ||| Sbjct 3002 GCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGA 2943 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 2942 GGGATGCCTTCCTTATCCTG 2923 >seq122442 Length=1060 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | ||||| || | ||||| || || ||||| ||||| | | Sbjct 507 CCACCACGAAGCCTGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAATCCGCA 566 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| |||| ||| || ||||| |||||||| || ||||| || ||||||||||| || Sbjct 567 AGAGTCCTGCCATCCTCCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGTGGG 626 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 627 ATCCCTTCCTTATCCTG 643 >seq37850 Length=568 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | |||||||| | ||| || || || ||||| ||||| | | Sbjct 107 CCACCACGAAGCCTGAGCACCAAATGCAGAGTCGACTCCTTCTGGATATTGTAATCCGCA 166 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| |||| ||| || ||||| || ||||| || ||||| || ||||||||||| || Sbjct 167 AGAGTCCTGCCATCCTCCAATTGCTTACCAGCGAAGATCAACCTCTGCTGATCCGGTGGG 226 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 227 ATCCCTTCCTTATCCTG 243 >seq20564 Length=789 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || | || || || | || | ||| || ||||| |||||||||||| Sbjct 514 GTTCCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAATCT 573 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| |||| | ||| || || || || ||||||||||||| ||| |||||||| ||| Sbjct 574 GCAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCTGGA 633 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 634 GGGATGCCTTCCTTATCCTG 653 >seq29583 Length=650 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||||| | |||| || | ||| ||||| ||| || ||||| || || | Sbjct 490 CCACCGCGGAGTCTGAGCACCAGGTGAAGAGTCGATTCCTTTTGA-ATATTGTAGTCAGC 432 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || | | ||| || | || |||||||||||||||| ||||||||| || || || Sbjct 431 AAGGGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGGGG 372 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| |||||||| Sbjct 371 AATGCCTTCCTTATCTTG 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741527949742080