Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq122442 107 2e-18 seq16096 105 5e-18 seq25063 102 6e-17 seq210190 93.3 3e-14 seq161123 93.3 3e-14 seq149362 89.7 4e-13 seq72254 84.2 2e-11 seq126729 82.4 6e-11 seq29583 82.4 6e-11 >seq122442 Length=1060 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| || ||||| || ||| |||| | || || Sbjct 297 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTGCGACCATCCTCG 356 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || ||||||| ||| ||||| || || | ||| ||||| ||| Sbjct 357 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGG 416 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | | | ||| || ||||||||||| || || ||||| Sbjct 417 ATCTTGGCTTTGACATTATCGATGGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTTT 476 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||||||||| ||||| Sbjct 477 CCGGTCAAAGTCTTCACAAAGATCTGCAT 505 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| ||||||| | |||||||| || || ||||||||| || ||||| ||| | Sbjct 735 CCACCCCTCAATCGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGCC 794 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | |||| |||| || || ||||| || ||||| | ||| || || || || Sbjct 795 AGGGTCCTGCCGTCCTCCAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCCGGGGGA 854 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCAC 45288 | |||||||| ||| || || ||| || | | || | |||| | ||| || Sbjct 855 ATTCCCTCCTTATCCTGGATCTTAGCCTTGAC-GTTGTCAATCGTGTCGGAGCTCTCAAC 913 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | || || ||||| || || || |||||||||||||| ||||| Sbjct 914 CTCGAGAGTGATGGTCTTCCCGGTAAGGGTCTTCACAAAGATCTGCAT 961 >seq16096 Length=889 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||||| |||||||| || |||| | || Sbjct 350 AACACCAAGTGAAGAGTTGATTCCTTCTGAATATTGTAGTCAGCAAGAGTGCGACCATCC 291 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || ||||| || || || || | || ||| ||||| ||||| | |||||||||||| Sbjct 290 TCTAGCTGTTTCCCTGCAAAAATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC 231 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| ||| ||| || | | | || || || ||||||| ||| || ||| Sbjct 230 TGAATCTTTGCCTTGACATTATCAATTGTATCTGAACTTTCAACCTCCAAGGTGATTGTC 171 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || ||||| ||||||||||||||| Sbjct 170 TTTCCGGTAAGGGTCTTGACAAAGATTTGCATG 138 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG-TCGTC 45186 ||||||||||| ||| |||||| ||||| || ||||| | || || | || || || Sbjct 575 ACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTC-TGCAAGTGTCCTTCCATCCTC 517 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || || || || || ||||||| ||| ||||| || || | ||||||||| ||| Sbjct 516 AAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCTG 457 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 |||||| || || | | | |||| | ||||| |||| || || || || Sbjct 456 AATTTTAGCTTTCACATTATCAATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGGTTTT 397 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| || || ||||| ||||||||||||||| Sbjct 396 GCCGGTGAGGGTCTTGACAAAGATTTGCATG 366 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||||||||||||| || || | | || || || || Sbjct 798 GTGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTG 739 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| |||||||| | || ||| ||||| || || | |||||||| ||| || | | Sbjct 738 CTTTCCAGCGAATATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGAA-TCT 680 Query 45253 TTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 | |||| | | || | | || || ||| ||||||| || || ||||| || | Sbjct 679 TGGCTTTCACATTGTCAATCGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTCCCTG 620 Query 45312 TCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| || |||||||| ||||| Sbjct 619 TCAGAGTTTTGACAAAGATCTGCAT 595 >seq25063 Length=710 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || ||| |||||||| ||||||||||| ||| || | || || Sbjct 160 ACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGGCCATCCTCA 219 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || |||||||| || || | || ||| ||||| || || | ||||||||||||| Sbjct 220 AGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 279 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||||| ||| || ||||| Sbjct 280 ATCTTAGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGGTCTTT 339 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| |||||||| ||||| Sbjct 340 CCGGTCAAGGTCTTGACAAAGATCTGCAT 368 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || ||| |||||||| |||||||| || ||| ||| | || || Sbjct 388 ACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGGCCATCCTCA 447 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || |||||||| || |||| ||||| ||||| || || | |||||||||||| | Sbjct 448 AGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGA 507 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||| | ||| || ||||| Sbjct 508 ATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCGACCTCAAGGGTGATGGTCTTT 567 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| ||||| || ||||| ||||| Sbjct 568 CCCGTCAAGGTCTTGACGAAGATCTGCAT 596 >seq210190 Length=6381 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | | ||| | || | ||| || || ||||||||| || |||||||| Sbjct 2987 GCCACCACGAAGTCTGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCAGC 2928 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | |||| || || || |||||||| || || | || |||||| || ||||| Sbjct 2927 GAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGTTGATCTGGAGG 2868 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCC-ACGCTGTCCCCACCCTCCA 45287 | |||||||||||| || || |||| || | | | | |||| | ||||| Sbjct 2867 GATGCCCTCCTTGTCCTGGATCTTG-GCTTTGACGTTGTCGATGGTGTCGGAGCTCTCCA 2809 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| | ||| | |||||||| || || |||||||||||||| |||||| Sbjct 2808 CCTCGAGGGTGACGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCATG 2759 >seq161123 Length=4290 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| ||||| || ||||||||| |||||||| || |||| | | | || || Sbjct 2342 ACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCCAGTGTCCTACCATCCTCG 2401 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| || || || | || ||| ||||| || || | || || |||||| | Sbjct 2402 AGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGA 2461 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | |||| | ||||| |||| ||||| || || Sbjct 2462 ATTTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATAGTTTTC 2521 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||||||||||||||| Sbjct 2522 CCTGTCAAAGTCTTCACAAAGATTTGCAT 2550 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| ||||||||||| || || || | || || || || || || || || Sbjct 2131 CTCCTTTTGAATGTTGTAATCTGCTAGAGTCCGGCCATCTTCAAGCTGCTTACCAGCAAA 2190 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||| | || ||| ||||| ||||| | |||||||||||| ||| ||| || || Sbjct 2191 TATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCTTTCACATT 2250 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | || || ||| ||||||| ||| || ||||| || || || |||||||| Sbjct 2251 ATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAGTGAGGGTCTTCAC 2310 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 2311 AAAGATCTGCAT 2322 >seq149362 Length=6446 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| ||||| || ||| |||||||||||||| || |||| | |||| || Sbjct 2408 ACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCCAGTGTCCTGCCGTCCTCA 2349 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| || || || | || ||| ||||| || || | || || |||||| | Sbjct 2348 AGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGA 2289 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | |||| | ||||| |||| ||||| || || Sbjct 2288 ATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATGGTTTTC 2229 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||||||| |||||||| Sbjct 2228 CCGGTCAAAGTCTTCACAAAAATTTGCAT 2200 >seq72254 Length=390 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| || ||||| || || || | || || Sbjct 70 ACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGGGTTCGGCCATCCTCA 129 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| ||||| || || | |||||||||||| | Sbjct 130 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGA 189 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | | |||| | ||||||||| | ||| || |||||| Sbjct 190 ATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTG 249 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| || |||||||| Sbjct 250 CCGGTGAGGGTTTTCACGAAAATTTGCAT 278 >seq126729 Length=3148 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||| || || || ||| | || |||| || || |||||||| Sbjct 744 CTCCTTCTGGATGTTATAATCTGCGAGAGTGCGGCCATCCTCCAACTGCTTGCCGGCGAA 685 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || ||| ||||| || || | |||||||||||| | || ||| || Sbjct 684 GATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGACCTTGGCCTTGACGTT 625 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| || ||||||||| | ||| || ||||||||||| || || ||||| Sbjct 624 GTCGATGGTGTCGGAACTCTCCACCTCGAGGGTGATGGTCTTGCCCGTTAGGGTTTTCAC 565 Query 45325 AAAGATTTGCATG 45337 || || |||||| Sbjct 564 GAATATCTGCATG 552 >seq29583 Length=650 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || || || || || || || || | | ||| ||||| || || | |||||| ||| Sbjct 646 TCCTCAAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTG 587 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCAC-GCTGTCCCCACCCTCCACCTCCACGGTAAT 45300 ||| ||| ||| |||| || | || | |||| || ||| ||||||| ||| || Sbjct 586 TCCTGAATCTTT-GCTTTCACGTTGTCAATGGTGTCGGAACTCTCAACCTCCAAGGTTAT 528 Query 45301 CGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || |||||||||||||||||||||||| Sbjct 527 GGTTTTCCCAGTGAGAGTCTTCACAAAGATTTGCATG 491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394039863955504