Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq161123 95.1 9e-15 seq149362 93.3 3e-14 seq55328 93.3 3e-14 seq135156 84.2 2e-11 seq29583 84.2 2e-11 >seq161123 Length=4290 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||||||| |||| ||| || || || |||||||||||||||||||| || Sbjct 3008 CCACCACGGAGTCTAAGCACCAGGTGGAGGGTGGACTCTTTTTGAATGTTGTAGTCAGCA 3067 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | || || | || ||||| ||| |||| || ||||| || || ||| Sbjct 3068 AGTGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGG 3127 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || || | | |||||| | ||| ||||||| | || Sbjct 3128 ATTCCCTCCTTGTCTTGGATCTTTGCCTTGACATTGTCAATAGTGTCAGAGCTTTCAACC 3187 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333 || | |||||| | ||||| || | ||||| ||||| || ||||| | | ||| Sbjct 3188 TCGAGGGTGATAGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCATCTGTTAAC 3242 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| ||| | ||||||||| ||||||||||||||||| || Sbjct 2551 TCCACCACGCAGACGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCCGC 2610 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | || ||||| ||||| || ||| |||| || || || ||||| ||| Sbjct 2611 AAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGG 2670 Query 18218 CACGCCTTCCTTATC 18232 | || ||||| || Sbjct 2671 AATACCCTCCTTGTC 2685 >seq149362 Length=6446 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| || |||| || || || || |||||||| ||||||||||| || Sbjct 1514 CCACCACGGAGTCTGAGAACCAAATGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCG 1455 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||| || | || ||||| ||| |||| || |||||||| ||| ||| Sbjct 1454 AGTGTCCGCCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGA 1395 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || || | |||| ||||| | ||| ||||||| | || Sbjct 1394 ATTCCCTCCTTGTCTTGGATCT-TTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAAC 1336 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| || | ||||| ||||| || ||||| Sbjct 1335 CTCGAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 1288 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| ||| | || ||||| ||||||||||||||||| || Sbjct 2199 TCCACCACGCAGACGGAGAACCAAGTGCAAGGTAGATTCCTTTTGAATGTTGTAGTCTGC 2140 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||| ||||| || ||| |||| || || || ||||| ||| Sbjct 2139 AAGAGTTCTTCCGTCTTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGG 2080 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || |||| | |||||| | ||| || ||| | || Sbjct 2079 GATACCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCAATTGTATCAGAGCTTTCCAC 2020 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | |||||| | || || || | || |||||||| || |||||| Sbjct 2019 CTCCAAGGTGATTGTCTTCCCTGTAAGCGTCTTTACAAAGATCTGCATT 1971 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || |||| || |||| ||| | |||||||| ||||||||||||||||| || Sbjct 1971 TCCACCACGCAGTCGGAGAACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGC 1912 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | || ||||| ||||| || ||| |||| || || || ||||| ||| Sbjct 1911 AAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGG 1852 Query 18218 CACGCCTTCCTTATC 18232 | || ||||| || Sbjct 1851 AATACCCTCCTTGTC 1837 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | || |||| || || || || ||||| ||||||||||| || ||| Sbjct 2426 CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC 2367 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | || || | || || || ||| | || || || || || || ||| Sbjct 2366 AGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCTGGGGGA 2307 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| || || ||| | | |||||| | ||| ||||| | || | Sbjct 2306 ATGCCTTCTTTGTCCTGAATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCCACT 2247 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || ||| |||| |||||||| || || ||||||||||||||| Sbjct 2246 TCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCATT 2199 >seq55328 Length=456 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 || ||||| ||| || | |||| |||||| || || || |||| |||||||| || || Sbjct 123 TCATCCCCTTAGCCTCAACACCAAGTGAAGAGTCGACTCCTTTTAGATGTTGTAATCCGC 64 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 | ||| | | |||||||||||||||||| ||| |||| ||||| |||||||| Sbjct 63 AAGAGTTCTCCCATCTTCCAATTGTTTGCCAGCAAAGATCAGTCTCTGTTGATC 10 >seq135156 Length=1536 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | || |||| ||| | ||||||||| |||||||||||||| || || Sbjct 1097 TCCTCCACGCAGCCGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAATCTGC 1156 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 | ||| | | ||| ||||| ||||| || ||| |||| || || || ||||| Sbjct 1157 AAGAGTTCTTCCATCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATC 1210 >seq29583 Length=650 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| || |||| |||||| || ||||| |||||||| |||||||| || Sbjct 490 CCACCGCGGAGTCTGAGCACCAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCAGCA 431 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | || || || ||| | || |||||||| || || ||| Sbjct 430 AGGGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGGGGA 371 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||||||| |||| | || ||||| | | | |||||| | || Sbjct 370 ATGCCTTCCTTATCTTGGATTT-TGGCTTTGACATTGTCGATGGTGTCAGAGCTTTCAAC 312 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | ||||| || | || || || || || ||||| Sbjct 311 CTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCAT 264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378349889216880