Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq29583 109 5e-19 seq117806 107 2e-18 seq4302 107 2e-18 seq149362 102 7e-17 seq161123 98.7 9e-16 seq211369 93.3 4e-14 seq126729 89.7 5e-13 seq72254 87.8 2e-12 >seq29583 Length=650 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| | || |||||| || Sbjct 264 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 323 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| || ||||||||| | || || |||||| Sbjct 324 GACACCATCGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 383 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | || || || ||||| || ||| | || || | | | || | || || || Sbjct 384 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGAGGA-TGGACGCACCCTTGCTGACTACAA 442 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| |||||||||||||| ||||| || ||||| Sbjct 443 TATTCAAAAGGAATCGACTCTTCACCTGGTGCTCAGACT 481 >seq117806 Length=5035 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| || || || || || || || |||||| |||| || || Sbjct 3460 CAACCATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTGGAGT 3519 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || ||||||||||||| | ||||| | Sbjct 3520 CCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCGG 3579 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || ||||| ||||| ||| | || ||| ||| | ||| | Sbjct 3580 ACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTCGCCGACT 3639 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || || |||||||| || || || || Sbjct 3640 ACAACATCCAGAAGGAGTCGACTCTCCACCTCGTGCT 3676 >seq4302 Length=1545 Score = 107 bits (118), Expect = 2e-18 Identities = 153/212 (72%), Gaps = 5/212 (2%) Strand=Plus/Minus Query 57925 AGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGT 57984 ||||| | | |||||||| | || | ||| || ||||| ||| || | | || | Sbjct 1540 AGTGGGCCCTGAAATGGATCGA---CGGCTCGGAGACTTTCGCGGAGCGGATCGTGGCCT 1484 Query 57985 TCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAG 58043 ||||| ||| || || || ||||| ||||| ||||| |||| | ||||||||| | || Sbjct 1483 TCGCCTGCGTGGAGGGGATCTTCTTCTCGGGAAGCTTCTGCG-CGATATTTTGGCTAAAA 1425 Query 58044 AAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGT 58103 || ||||| ||||||| || ||||| || ||||||||||| ||||| || || || Sbjct 1424 AAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCGCGAGATGAAGGC 1365 Query 58104 CTCCATACTGATTTTGCGTGCCTAATGTACTC 58135 ||||| || || |||||||| | ||||| Sbjct 1364 CTCCACTGCGACTTCGCGTGCCTTCTCTACTC 1333 >seq149362 Length=6446 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||| |||| || ||||| || || | || || ||| || Sbjct 2200 ATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTCA 2259 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || || || |||||| |||||| | || || ||||| Sbjct 2260 GACACAATTGATAACGTCAAGGCAAAG-ATTCAGGACAAAGAAGGCATTCCCCCAGACCA 2318 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || || || ||| | || ||| | ||| || ||||| || Sbjct 2319 GCAGAGGCTCATTTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 2378 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| ||||| |||||||| ||| |||| || Sbjct 2379 CATTCAGAAAGAGTCGACTCTGCATTTGGTGCT 2411 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || || || || ||| | || || || || Sbjct 2428 ATGCAGATCTTTGTGAAGACACTTACTGGAAAGACCATAACCTTGGAGGTAGAGAGTTCT 2487 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || ||| || ||| | ||||||||||||| | || || ||||| Sbjct 2488 GATACAATTGATAATGTGAAAGCAAAGATTCA-GGACAAGGAAGGCATTCCTCCAGACCA 2546 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || ||||| ||||| || ||| | ||||| | |||| || ||||| || Sbjct 2547 GCAGAGGCTCATATTTGCTGGTAAGCAGCTTGAAGATGGGAGGACTCTGGCGGATTACAA 2606 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||||||| || ||||| ||||| || || ||| Sbjct 2607 CATTCAAAAGGAGTCGACCCTTCACCTTGTCCTT 2640 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || |||||||| || || || || || |||||| | || || ||| ||| Sbjct 1744 ATGCAGATCTTTGTAAAGACGCTTACTGGGAAGACAATCACCCTGGAGGTGGAAAGCTCC 1803 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| || || ||||||||| || | || || || ||| Sbjct 1804 GATACAATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 1863 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || ||||||||||| ||| | ||| | || || ||| Sbjct 1864 CAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTACAAC 1923 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||| || | || |||| || ||||| | || || Sbjct 1924 ATTCAAAAGGAATCAACCTTGCACTTGGTTCTCCGACTGCGTGGTGG 1970 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || |||||||| || ||||| || || |||||| | || || ||| || Sbjct 1972 ATGCAGATCTTTGTAAAGACGCTTACAGGGAAGACAATCACCTTGGAGGTGGAAAGCTCT 2031 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | ||| ||||||||| || | || || || ||| Sbjct 2032 GATACAATTGACAATGTCAAGGCAAAAATCCAGGACAAGGAGGGTATCCCCCCAGATCAG 2091 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || ||||||||||||||| | ||| | || || ||| Sbjct 2092 CAGAGGCTCATCTTTGCAGGTAAACAGTTGGAAGACGGAAGAACTCTTGCAGACTACAAC 2151 Query 31373 ATTCAAAAAGAATCGAC 31389 |||||||| ||||| || Sbjct 2152 ATTCAAAAGGAATCTAC 2168 >seq161123 Length=4290 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || |||||||| || |||||| |||| |||||| || Sbjct 3234 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 3175 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | ||||| || ||| | |||||||| || | || || ||||| Sbjct 3174 GACACTATTGACAATGTCAAGGCAAAGA-TCCAAGACAAGGAGGGAATCCCCCCAGACCA 3116 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACT--CTATGACTATGAGCGATTAT 31369 ||| | || || || |||||||| ||| | || ||| | | ||| || || || Sbjct 3115 GCAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACACT-TGCT-GACTAC 3058 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||||||||| || || || || ||||| |||||||| Sbjct 3057 AACATTCAAAAAGAGTCCACCCTCCACCTGGTGCTTAGACT 3017 >seq211369 Length=926 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || ||||| || |||||| | || |||||| || Sbjct 346 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 405 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| ||||||||||| | || || |||| Sbjct 406 GACACCATTGATAATGTCAAAGCCAAAATCCAAAACAAGGAAGGCATCCCCCCATACCAA 465 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | || || || ||||| || ||| | || || | | | || | | || || || Sbjct 466 CAAAGGCTGATTTTTGCTGGTAAGCAGCTTGAGGA-TGGACGCACCCTTGGTGACTACAA 524 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| |||| ||||||||||||| |||||| || ||||| | || |||| Sbjct 525 TATTTAAAAGGAATCGACTCTTCTTCTGGTTCTCAGACTCCGCGGTGGTA 574 >seq126729 Length=3148 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || ||||| || || || || ||||| || |||||| |||| || || Sbjct 549 AACCATGCAGATATTCGTGAAAACCCTAACGGGCAAGACCATCACCCTCGAGGTGGAGAG 608 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| |||| | ||||| | | ||||||||| ||| | || || || Sbjct 609 TTCCGACACCATCGACAACGTCAAGGCCAAGGTCCAGGACAAGGAGGGCATCCCCCCAGA 668 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||| | || || ||||| ||||| |||||||| || ||| | ||||| Sbjct 669 CCAGCAGAGGCTCATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGCACTCTCGCAGATTA 728 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||| || || || || || || || || || ||| Sbjct 729 TAACATCCAGAAGGAGTCTACACTCCACCTTGTCCTT 765 >seq72254 Length=390 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || ||||| || |||||| | || || || | || Sbjct 278 ATGCAAATTTTCGTGAAAACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 219 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || |||| | | | ||| | ||||||||| || | || || ||||| Sbjct 218 GACACCATTGACAACGTTAAGGCCAAGATTCA-GGACAAGGAGGGAATCCCCCCGGACCA 160 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||| | || || || | ||||| || Sbjct 159 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTTGCTGATTACAA 100 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||| || ||| |||| ||| | ||| | || |||| Sbjct 99 TATCCAGAAGGAGTCGACCCTCCATTTGGTGCTTCGTCTGCGTGGTGGTA 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444568269070080