Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq114929 138 4e-28 seq76096 84.2 7e-12 >seq114929 Length=4696 Score = 138 bits (152), Expect = 4e-28 Identities = 500/772 (65%), Gaps = 14/772 (2%) Strand=Plus/Plus Query 718 AAGCTCGCACTCATTGAGCTGCTGCCACACACGAAGGGCGAGTGGGCGTTCAAGGGGCAA 777 ||| |||| | || || |||| || || || ||||| |||||||| | ||| | | Sbjct 872 AAGATCGCTTTTATCGAATTGCTACCTCATACCAAGGGTGAGTGGGCAATGAAGCG---A 928 Query 778 CTGGTAA---CGCTGGAGCCTTGGCAGAAGTTCGGCTT-GATGGCGACCTTCGGATGGCT 833 || || |||||||||||||||| || || || | | | || || || || ||| | Sbjct 929 ATGAAAATCTCGCTGGAGCCTTGGCAAAAATTTGGGATAGCTTGC-ACTTTTGGGTGGAT 987 Query 834 -CAACAAGCGCACCGGCAAGCGCCGGTTTCGAGAAAGCTACTGGGAGGTCCCCAGAAAGA 892 | | || | | || | || || || |||| || || ||||| || || | |||| Sbjct 988 GCGAAAAAAGGAT-GGTTATCGTCGCTTCAGAGAGAGTTATTGGGAAGTTCCACGTAAGA 1046 Query 893 ACGGCAAATCGGTGACCGCCGCGGGCGTCGGCATCGGCATGTTCGTCCTCGACGACGAGT 952 | || ||||| | | || || || || | | |||||| | || | ||||| Sbjct 1047 ATGGTAAATCAGCAATTGCGGCTGGTGTTGCACTTAACATGTTTGCGAATGATGGCGAGT 1106 Query 953 TCGGTGCGGAGGTATATGCGGGCGCGACGACCGAAAAGCAGGCGTGGGAGGTTTTCCGTC 1012 | ||| | ||||| ||||| || || || || || || || || ||||||||||| | Sbjct 1107 TTGGTTCAGAGGTCTATGCAGGTGCAACAACTGAGAAACAAGCTTGGGAGGTTTTTAAAC 1166 Query 1013 CAGCGCAGTTGATGGTCAAGCGCTCGCCCATGCTGATCGATTCGGCTGGAATTGAGGTGA 1072 | || || |||| || || ||||| | | || || | || || ||| | | Sbjct 1167 CTGCTAGATTAATGGCCATACGATCGCCTGAGTTTATTGAAGCTGCAGGTATTTTAATTA 1226 Query 1073 ATGCC--TCGAATATGAACAAGCCGGCCGACGGCAGCCGATTTGAGCCGATCATCGGCAA 1130 |||| | | | |||| | || | || || | |||||||||||||| ||| | Sbjct 1227 ATGCAGGTAGCCT-TGAAATA-CCAGATGAAGGTTCCGTATTTGAGCCGATCACTGGCGA 1284 Query 1131 CCCAGGCGACGGCGCGTCGCCGTCGTGTGCGATCGTGGACGAGTATCACGAGCACGACAG 1190 || || || ||| || ||||| | || || || | ||| ||||| | | Sbjct 1285 TCCTCCTGATGGTCAGTCACCTCACTGTGCCGTGGTTGATGAATTTCATGAGCATCAGAC 1344 Query 1191 CGCCGCGCTGTACGAAACAATGCTGACTGGCATGGGCGCGCGTCGACAGCCGCTCATGTT 1250 | || || ||||| || |||| || || ||||| || || || || ||| | || || Sbjct 1345 TTCAGCACTATACGACACGATGCAAACAGGGATGGGTGCTCGCCGTCAACCGATGATATT 1404 Query 1251 CATCATCACGACTGCGGGCGCGAACATCGAGGGGCCGTGCTTCGACAAGCGCCGGCAGGT 1310 | |||||| ||||| || | || || || || || | ||| || | | || Sbjct 1405 TACCATCACAACTGCAGGTTTTGATATTGAAGGTCCATGTTATGACCTTCGGAGCCGTGT 1464 Query 1311 GATCGAAATGCTCGAAGGGACGGTGCCAGACGACGAGCTTTTCGGCTGGATCTGGACGAT 1370 | |||||||| || || ||||| || || |||||||| || ||||| ||||| || Sbjct 1465 GCAAGAAATGCTATTGGGTACAGTGCCCGATGATGAGCTTTTTGGTTGGATATGGACCAT 1524 Query 1371 CGACGAAGGGGACGATTGGACCGATCCGCGCGTGCTGGCGAAAGCCAATCCGAATATCGG 1430 || || || || |||||||| ||||| || |||| ||||| ||||| ||| || Sbjct 1525 TGATGACGGAGATGATTGGACTGATCCAAATGTATTGGCCAAAGCAAATCCTAATTATGG 1584 Query 1431 AATCTCGGTCTATCAGGACTATCTGGAAAGCCAGCAGCAGCGTGCGATTAAG 1482 | || || ||| |||||||| ||| ||||||| || || ||| || Sbjct 1585 GGTTTCTGTTTATGGTGACTATCTAGAATCTCAGCAGCGCCGAGCAATTCAG 1636 >seq76096 Length=379 Score = 84.2 bits (92), Expect = 7e-12 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15231 CGTGGCCGATTCAGGCCACCGGCTTCGAGCAGACATCCGACGCGCAGCAGCCATCGCCGA 15290 ||||||| || ||||| |||||||| ||| | | || ||||| || || | Sbjct 12 CGTGGCCAATAGAGGCCGAAGGCTTCGAAATGACCGGTCAGGGCCAACAGCCTTCCCCCA 71 Query 15291 CGCTGCGGGTGGGGGACATCAACGGAACGATTTCGGCGCTGTGCGTTGCGCTTGG-CGAT 15349 ||||| | ||||| || || |||| || | |||||| | | | ||| | ||| Sbjct 72 CGCTGAGCGTGGGCAACGTCGACGGTTTTATCACCGCGCTG-GTGATCTACTTCGACGAC 130 Query 15350 CTCGTCGGCGCGAAGGTGTTCCGGCGCCGGACACTCGCGCGCTACCTCGACGCCGTGAAC 15409 || ||||| |||||| || || | ||| || || |||| || || ||||| |||||| Sbjct 131 CTGGTCGGGGCGAAGCTGACTCGCCACCGCACGCTGACGCGATATCTGGACGCGGTGAAC 190 Query 15410 TTTCCGGCCGGCAATCCGACGGCGGACCCGAACGAAGAAATGCCGCCG 15457 ||||| | |||||| || ||| ||||| ||||||| | |||||| Sbjct 191 TTTCCCGGCGGCAACCCTGAGGCAGACCCTGACGAAGAGTTTCCGCCG 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170236204408480