Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq114929 223 9e-54 >seq114929 Length=4696 Score = 223 bits (246), Expect = 9e-54 Identities = 497/742 (67%), Gaps = 8/742 (1%) Strand=Plus/Plus Query 22531 CCACACACCAAAGGGGAGTGGGCATTTAAACGGATGCCCATTACGCTTGAACCCTGGCAG 22590 || || ||||| || ||||||||| | || || ||| || |||| || || ||||| Sbjct 896 CCTCATACCAAGGGTGAGTGGGCAATGAAGCGAATGAAAATCTCGCTGGAGCCTTGGCAA 955 Query 22591 TTGTTCTGTAT---TTGTGTTGTGTTTGGGTGGGTGAGAAAAAAGAGCGGCCTGCGTCGA 22647 || | || ||| | ||||||||| || |||||||| || ||||| Sbjct 956 AAATTTGGGATAGCTTGCACT---TTTGGGTGGATGCGAAAAAAGGATGGTTATCGTCGC 1012 Query 22648 TTTCGCGAGGCTTACAACGAAATACCCCGTAAAAACGGGAAATCAGCAATGTCTGCTGGC 22707 || | ||| ||| ||| | || ||||| || || ||||||||||| | ||||| Sbjct 1013 TTCAGAGAGAGTTATTGGGAAGTTCCACGTAAGAATGGTAAATCAGCAATTGCGGCTGGT 1072 Query 22708 GTTGGTCTGTATATGTTTGCCTGCGATGATGAATTTGGCGCTGAAGTGTATTCCGGGGCC 22767 |||| || | |||||||| |||| || ||||| | || || ||| | || || Sbjct 1073 GTTGCACTTAACATGTTTGCGAATGATGGCGAGTTTGGTTCAGAGGTCTATGCAGGTGCA 1132 Query 22768 ACAACAGAGAAACAGGCGTGGGAAGTTTTTCGTCCAGCCAGACTGATGGCGCAACGCACG 22827 ||||| |||||||| || ||||| |||||| || || ||| | ||||| ||| || Sbjct 1133 ACAACTGAGAAACAAGCTTGGGAGGTTTTTAAACCTGCTAGATTAATGGCCATACGATCG 1192 Query 22828 GAACCATTGCGTGAAGCATTTGGTATTGAAGTACATGCTCAAAGCATGAGCCGTCCGGAG 22887 || |||||| |||||| | | |||| ||| | || || Sbjct 1193 CCTGAGTTTATTGAAGCTGCAGGTATTTTAATTAATGCAGGTAGCCTTGAAATACCAGAT 1252 Query 22888 GACGGTGCCCGTTTTGAACCGTTGATTGGAGATCCCGGAGACGGCGCGTCGCCGAGTTGC 22947 || ||| || ||||| ||| | | ||| ||||| || || ||| || || Sbjct 1253 GAAGGTTCCGTATTTGAGCCGATCACTGGCGATCCTCCTGATGGTCAGTCACCTCACTGT 1312 Query 22948 GCCCTCATTGATGAATATCACGAGCATCAGACCGATGCGCTTTACCAGACGATGCAAACT 23007 ||| | ||||||||| ||| ||||||||||| || || ||| | ||||||||||| Sbjct 1313 GCCGTGGTTGATGAATTTCATGAGCATCAGACTTCAGCACTATACGACACGATGCAAACA 1372 Query 23008 GGGATGGGGGCACGTCGTCAGCCGCTGATTTTTGGTATCACCACTGCGGGCTATAACATT 23067 |||||||| || || ||||| ||| |||| ||| ||||| ||||| || | | | ||| Sbjct 1373 GGGATGGGTGCTCGCCGTCAACCGATGATATTTACCATCACAACTGCAGGTTTTGATATT 1432 Query 23068 GAAGGACCATGCTACGACAAACGTCGTGAAGTGATCGAAATGCTTGAAGGGATTGTGCCC 23127 ||||| ||||| || ||| || | ||| |||||||| || | |||||| Sbjct 1433 GAAGGTCCATGTTATGACCTTCGGAGCCGTGTGCAAGAAATGCTATTGGGTACAGTGCCC 1492 Query 23128 AATGATGAACTGTTCGGGATTATTTATACCATTGACGACGGGGATGACTGGACAGATCCG 23187 ||||||| || || || || | |||||||| ||||| ||||| ||||| ||||| Sbjct 1493 GATGATGAGCTTTTTGGTTGGATATGGACCATTGATGACGGAGATGATTGGACTGATCCA 1552 Query 23188 GCGGTATTGCGTAAAGCGAACCCCAA-TATGGGGATTTCTGTCTACAGCGATTACCTGTT 23246 |||||| ||||| || || || ||||||| ||||||| || | || || || Sbjct 1553 AATGTATTGGCCAAAGCAAATCCTAATTATGGGG-TTTCTGTTTATGGTGACTATCTAGA 1611 Query 23247 ATCTCAACAGCGCGCGGCAATT 23268 |||||| |||||| |||||| Sbjct 1612 ATCTCAGCAGCGCCGAGCAATT 1633 Score = 208 bits (230), Expect = 2e-49 Identities = 538/819 (66%), Gaps = 48/819 (6%) Strand=Plus/Plus Query 25131 TCAACAATATTGAAGAGCTGGGGCTTGGTTTCATTAACTATTCCCTTGTGCCGTATCTGA 25190 ||||||||||||| | ||||| | || | |||||||| || ||||| ||| ||| Sbjct 3308 TCAACAATATTGAGCATATGGGGATGTCATTTGTGAACTATTCACTGGTGCCTTATATGA 3367 Query 25191 CCCGTATTGAACAGCGGATCAATACAGGGCTGGTCAGGG-AGAGCAAACAGGGGAAGTTT 25249 | || ||||| ||| ||||| || ||| ||| | ||| || | || | | Sbjct 3368 CACGAATTGAGTCGCGCATCAAAGTTGGTCTGATCAAGCCAGATGAA-CGCAAAAAATAT 3426 Query 25250 TACGCCAAATTTAATGCCGGAGCATTGTTGCGTGGCGACATGAAATCCCGCTTTGAAGCG 25309 || || || |||||||| ||||| | || ||||| || ||||||| || | |||| | Sbjct 3427 TATGCAAAGTTTAATGCTGGAGCCCTTTTACGTGGTGATTTGAAATCACGTTATGAATCT 3486 Query 25310 TATGCCACGGGGATCAACTGGGGGATTTATTCC--CCTAATGACTGCCGTGATCTGGAAG 25367 |||| || || ||| | ||||| ||| || || ||||| ||||| | || | Sbjct 3487 TATGGCAAAGGTATCCAATGGGG--TTTTCTCAGTCCGAATGATGTACGTGAGTTAGAGG 3544 Query 25368 ATATGAATCCCCGACCAGGCGGCGATGTGTATCTGACACCGATGAACATGACCACCAGTC 25427 ||||| |||| || || || ||||| ||||| || || ||||| ||||| || || Sbjct 3545 ATATGGATCCTCGTGACGGTGGTGATGTTTATCTAACGCCTATGAATATGACGACAGATC 3604 Query 25428 CCTCTGCTGGCGATGACAACGGTAAGAAAAAGGAGAGTGGAGATGCAGACAAAACAGCGT 25487 | |||| ||| || ||||| | ||| | | Sbjct 3605 C-----------------------AGAA----GAGGGTAAAGATGGAAGTTAAATA---T 3634 Query 25488 CTTGATATACCGCTGAACCTGAAATCCGTCAGTGATTCCGGGGAATTTGAAGGTTACGGT 25547 | || | ||||| || | ||||| ||| ||| | || || |||||||| || | Sbjct 3635 TTAAATGTTCCGCTAAAAATTAAATCTGTCTCTGAAACAGGTGAGTTTGAAGGATATGCA 3694 Query 25548 TCTGTTTTTGGTGTTAAGGACAGCCACGATGATGTGGTGGTCCCCGGTGCCTTTACCACA 25607 |||||||||| ||| | || || || ||| | || |||| ||||| || ||| | Sbjct 3695 TCTGTTTTTGATGTCATTGATAGTTACAGCGATATCGTTGTCCGAGGTGCATT--CCAAA 3752 Query 25608 ACACTCCAGAAAT------GGAGCGaaaaaaaGGCGCTGCCTGCGTTGCTCTGGCAGCAC 25661 | ||| ||| ||||||| || | | || | |||| ||||||||| Sbjct 3753 AATCTCTCGAACGTTGGGCGGAGCGAGAAGATT----TACCCTCAGTGCTGTGGCAGCAC 3808 Query 25662 CGCATGGATGAGCCCATCGGTGTGTACACCGAAATGAAAGAAGATGATGTCGGGCTTTAT 25721 |||| ||||| || || | ||| ||||||||||| |||||| ||| |||| | Sbjct 3809 AAAATGGCAGAGCCTATTGGACCATTCACAGAAATGAAAGAGGATGATTACGGACTTTTT 3868 Query 25722 GTCAGGGGGCGATTACTCGTTGATGATGATCCCCTGGCAAAACGTGCACATGCCCATATG 25781 || | || || ||||| ||||||||||||| |||| ||||| |||||||| |||||| Sbjct 3869 GTTCGTGGTCGTTTACTTATTGATGATGATCCATTGGCCAAACGAGCACATGCTCATATG 3928 Query 25782 AAGGCCGGTTCTTTAACCGGCCTTTCTATTGGCTACATCCTGAAAGACTGGGAATACGAC 25841 || || || | | | || | || ||||| ||||| || ||||| |||||||| ||| Sbjct 3929 AAAGCTGGCAGTGTCAAAGGAATGTCGATTGGTTACATGCTCAAAGATTGGGAATATGAC 3988 Query 25842 CGTGAAAAAGGGGTATTCCTGCTGAAAGAGATCGACCTGTGGGAGGTCAGTCTGGTGACG 25901 || |||||| | |||| | || ||||| || || |||||||| || | | |||||| Sbjct 3989 TCTGCAAAAGGTGCATTCTTACTTAAAGAAATTGATCTGTGGGAAGTGTCTATTGTGACG 4048 Query 25902 TTTCCTTCCAATGATGAGGCACGTATCAGTGATGTGAAA 25940 | || | ||| ||| ||| || | || |||||| Sbjct 4049 ATGCCCGCTAATACTGAAGCAAAGATTACCGAGGTGAAA 4087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135770833916256