Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq114929 176 1e-39 >seq114929 Length=4696 Score = 176 bits (194), Expect = 1e-39 Identities = 541/834 (65%), Gaps = 6/834 (1%) Strand=Plus/Plus Query 763 CCACACACCAAGGGGGAGTGGGCATTCAAGAGGATGCCCATCACGCTGGAACCGTGGCAG 822 || || |||||||| ||||||||| | ||| | ||| ||| ||||||| || ||||| Sbjct 896 CCTCATACCAAGGGTGAGTGGGCAATGAAGCGAATGAAAATCTCGCTGGAGCCTTGGCAA 955 Query 823 CTCTTTGTGATCTGCTGTGCGTTTGGCTGGGTC--AATAAAGGCTCCCGGCTG-CGCCGC 879 |||| ||| || | ||||| ||| | || ||||| | || | || ||| Sbjct 956 AAATTTGGGATAGCTTGCACTTTTGGGTGGATGCGAAAAAAGGAT---GGTTATCGTCGC 1012 Query 880 TTCAGGGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCAATCTCTGCCGGT 939 ||||| ||| ||| ||| | || |||||||| || ||||| ||||| | || ||| Sbjct 1013 TTCAGAGAGAGTTATTGGGAAGTTCCACGTAAGAATGGTAAATCAGCAATTGCGGCTGGT 1072 Query 940 GTTGCCCTGTATTGTTTTGCCTGTGATAACGAGTTCGGCGCGGAAGTGTATTCCGGTGCC 999 ||||| || | ||||| |||| |||||| || | || || ||| | ||||| Sbjct 1073 GTTGCACTTAACATGTTTGCGAATGATGGCGAGTTTGGTTCAGAGGTCTATGCAGGTGCA 1132 Query 1000 ACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGTAAACGCACA 1059 || || |||||||| || ||||| || ||| || || || | ||| | ||| | Sbjct 1133 ACAACTGAGAAACAAGCTTGGGAGGTTTTTAAACCTGCTAGATTAATGGCCATACGATCG 1192 Query 1060 CCCATGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCTCAAACATGAACCGTCCGGAG 1119 || | | | ||||| || ||| |||| || | | | | || || Sbjct 1193 CCTGAGTTTATTGAAGCTGCAGGTATTTTAATTAATGCAGGTAGCCTTGAAATACCAGAT 1252 Query 1120 GATGGCGCGCGGTTTGAACCGCTGATCGGCAACCCCGGTGATGGTTCATCACCCCACTGT 1179 || || | ||||| ||| | | ||| | || ||||||| ||||| |||||| Sbjct 1253 GAAGGTTCCGTATTTGAGCCGATCACTGGCGATCCTCCTGATGGTCAGTCACCTCACTGT 1312 Query 1180 GCCGTGGTTGATGAATATCACGAGCATGCCACCGATGCGCTTTATACCACAATGCTTACC 1239 |||||||||||||||| ||| |||||| || || || || ||| |||| || Sbjct 1313 GCCGTGGTTGATGAATTTCATGAGCATCAGACTTCAGCACTATACGACACGATGCAAACA 1372 Query 1240 GGGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCGGGTACAACATT 1299 |||||||| || || ||||| || |||| | ||||||| || || || | | ||| Sbjct 1373 GGGATGGGTGCTCGCCGTCAACCGATGATATTTACCATCACAACTGCAGGTTTTGATATT 1432 Query 1300 GAGGGGCCGTGCTACGACAAGCGGCGGGAAGTCATCGAGATGCTCAACGGCTCGGTGCCT 1359 || || || || || ||| ||| | || || ||||| || | ||||| Sbjct 1433 GAAGGTCCATGTTATGACCTTCGGAGCCGTGTGCAAGAAATGCTATTGGGTACAGTGCCC 1492 Query 1360 AACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCG 1419 | ||||| || || || || | ||| ||||||| || || || ||||| || || Sbjct 1493 GATGATGAGCTTTTTGGTTGGATATGGACCATTGATGACGGAGATGATTGGACTGATCCA 1552 Query 1420 CAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTA 1479 | || ||| ||||| ||||| ||| ||| || || |||||| | || | | | | Sbjct 1553 AATGTATTGGCCAAAGCAAATCCTAATTATGGGGTTTCTGTTTATGGTGACTATCTAGAA 1612 Query 1480 AGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTAAAACAAAACAC 1539 |||||||| || || | | || || | | ||| | ||||| || ||||| Sbjct 1613 TCTCAGCAGCGCCGAGCAATTCAGAATGCTTCTAAGCAAAATGCTTTTAAGACTAAACAT 1672 Query 1540 CTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAACCTGGTGAGCTGGCAG 1593 || || | ||||| || | ||| | || |||||||| ||| || |||||| Sbjct 1673 CTAAACGTTTGGGTATCTTCTCGTACAGCATATTTCAATATGGAGAAATGGCAG 1726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118212582103168