Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq149362 95.1 1e-14 seq72254 95.1 1e-14 seq161123 86.0 6e-12 seq210190 84.2 2e-11 >seq149362 Length=6446 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||| | ||||| || ||||||||||| || || Sbjct 2198 CCACCACGCAGACGGAGAACCAAGTGCAAGGTAGATTCCTTTTGAATGTTGTAGTCTGCA 2139 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| | ||||||||| ||| |||| || | |||||||| || || Sbjct 2138 AGAGTTCTTCCGTCTTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGG 2079 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||||||| || | | || | ||| || | | |||||| Sbjct 2078 ATACCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCAATTGTATCAGAGCTTTCCACC 2019 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || || | ||| ||||| || || ||||| Sbjct 2018 TCCAAGGTGATTGTCTTCCCTGTAAGCGTCTTTACAAAGATCTGCAT 1972 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || || || | || |||||||| |||||||| ||||| | Sbjct 2426 CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC 2367 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||| || ||||| || || ||| | || || | ||||| || || || Sbjct 2366 AGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCTGGGGGA 2307 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| | |||| || | | || | |||||| | | ||||| Sbjct 2306 ATGCCTTCTTTGTC-CTGAATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCCAC 2248 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || |||||||| || || || || |||||||| Sbjct 2247 TTCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 2200 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| ||||||||||| ||||| || || ||| ||||| ||||| Sbjct 2631 GTGAAGGGTCGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTCCCATCTTCAAGCTG 2572 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||||||||| | || || | ||||| || ||||| |||||||| ||||| ||| | | Sbjct 2571 CTTACCAGCAAATATGAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTC-CTGAATCT 2513 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 ||| ||| | | || | ||| || | ||| ||||| | ||| | ||||| || | Sbjct 2512 TTGCTTTCACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAG 2453 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 | | || || || || || ||||| Sbjct 2452 TAAGTGTCTTCACAAAGATCTGCAT 2428 >seq72254 Length=390 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| |||||||||| ||||| || || || || || || ||| Sbjct 124 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTG 183 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | || || |||| | | ||||||||||| ||| | Sbjct 184 TCC-TGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGAT 242 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | ||||| ||||| |||||||| Sbjct 243 AGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 278 >seq161123 Length=4290 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||||||||||||||| || || | ||| | ||| |||||||| || ||| Sbjct 3038 GTGGACTCTTTTTGAATGTTGTAGTCAGCAAGTGTTCGGCCGTCCTCGAGCTGCTTGCCA 3097 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | |||||| || || || || || || ||||| ||| ||| || Sbjct 3098 GCAAAGATCAGCCTTTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTG 3157 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | || ||||| | ||| | |||||||| || | ||| Sbjct 3158 ACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTCTTGCCTGTGAGGGTT 3217 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 3218 TTCACAAAGATCTGCAT 3234 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || || || | || ||||| || || ||||| ||||| | Sbjct 2324 CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCC 2383 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || || |||||||| || || ||| |||| || | ||||| || || || Sbjct 2384 AGTGTCCTACCATCCTCGAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 2443 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| |||| | || | | || | |||||| | | ||||| Sbjct 2444 ATGCCTTCTTTGTC-CTGAATTTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCAC 2502 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || ||||| || || || || |||||||| Sbjct 2503 TTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 2550 >seq210190 Length=6381 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| |||||||| || || ||| |||| || | || ||||| ||||| ||||| || || Sbjct 2915 GTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGTTGATCTGGAGGGATGCCCTCCTT 2856 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || ||| | | || | ||||||| | ||||||||| | ||| || Sbjct 2855 GTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGAC 2796 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | || || || || || ||||| Sbjct 2795 GGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCAT 2760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494730679180800