Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq122442 89.7 4e-13 seq72254 89.7 4e-13 seq37850 89.7 4e-13 >seq122442 Length=1060 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| || | || |||||| || | ||||||||||| || || | |||| || Sbjct 752 CACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGCCAGGGTCCTGCCGTCCTC 811 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||| || || |||||||| ||||||| ||| ||||| | || | || || || || Sbjct 812 CAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCCGGGGGAATTCCCTCCTTATCCTG 871 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| | ||||| || ||| |||||| ||| ||| || || | || || || | Sbjct 872 GATCTTAGCCTTGACGTTGTCAATCGTGTCG-GAGCTCTCAACCTCGAGAGTGATGGTCT 930 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | ||||| || || |||||||| || ||||| Sbjct 931 TCCCGGTAAGGGTCTTCACAAAGATCTGCAT 961 >seq72254 Length=390 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | ||||||||||| || |||||| || | ||||||||| | Sbjct 52 CCACCACGCAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGCA 111 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | || ||||| ||||| |||| ||||| || || | || Sbjct 112 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGG 171 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || ||| ||| | || || || ||| ||||| || ||| || Sbjct 172 ATTCCCTCCTTGTC-CTGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCAC 230 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || ||||| || |||||||| ||||||||||| Sbjct 231 CTCAAGGGTGATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 278 >seq37850 Length=568 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| ||| |||||| || | ||||||||||| ||| || || | || || Sbjct 352 CACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCGGCCAAAGTTCGGCCATCCTC 411 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||| || || ||||| || ||||| | ||| || || | || | || || || || Sbjct 412 CAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTG 471 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| | ||||| || ||| || || ||| |||||| || | || || || | Sbjct 472 GATCTTGGCCTTGACGTTGTCAATGGTATC-AGAGCTCTCGACCTCGAGAGTGATCGTCT 530 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||||||| ||||| || || || ||||| Sbjct 531 TCCCGGTTAGGGTTTTGACGAAGATCTGCAT 561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380370180919392