Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq114929 181 3e-41 seq4104 87.8 5e-13 >seq114929 Length=4696 Score = 181 bits (200), Expect = 3e-41 Identities = 535/816 (66%), Gaps = 44/816 (5%) Strand=Plus/Plus Query 3314 TCAACAATATTGAAGAGCTGGGGCTGGGATTTATCAACTATTCACTGGTGCCGTATCTGA 3373 ||||||||||||| | ||||| || |||| | ||||||||||||||||| ||| ||| Sbjct 3308 TCAACAATATTGAGCATATGGGGATGTCATTTGTGAACTATTCACTGGTGCCTTATATGA 3367 Query 3374 CCCGCATCGAACAGCGGATCAACACCGGACTGGT--ACGAAAAAGTAAGCAGGGCGTTTT 3431 | || || || ||| ||||| || ||| | | | | | | ||| | || Sbjct 3368 CACGAATTGAGTCGCGCATCAAAGTTGGTCTGATCAAGCCAGATGAACGCAAAAAATATT 3427 Query 3432 TTACGCCAAATTTAACGCGGGGGCGTTACTGCGTGGGGATATGAAGTCCCGTTTTGAAGC 3491 | || || ||||| || || || | | ||||| ||| |||| || |||| |||| | Sbjct 3428 AT--GCAAAGTTTAATGCTGGAGCCCTTTTACGTGGTGATTTGAAATCACGTTATGAATC 3485 Query 3492 CTATGCCACCGGGATCAACTGGGGGATTTACTC--TCCCAATGACTGCCGCGACCTGGAA 3549 |||| || || ||| | ||||| ||| ||| ||| ||||| || || | || Sbjct 3486 TTATGGCAAAGGTATCCAATGGGG--TTTTCTCAGTCCGAATGATGTACGTGAGTTAGAG 3543 Query 3550 GATATGAATCCGCGTCCCGGTGGTGATGTCTATCTCACACCGATGAACATGACCACGAAA 3609 |||||| |||| ||| |||||||||||| ||||| || || ||||| ||||| || | Sbjct 3544 GATATGGATCCTCGTGACGGTGGTGATGTTTATCTAACGCCTATGAATATGACGACAGAT 3603 Query 3610 CCCTCCGATGGCAGTAAAGCCGGTAAGCAGAAGGATAACGCCAATGCAGACGAAACAACG 3669 || || | || ||||| ||| ||| || ||| | Sbjct 3604 CC----------AGAAGAG--GGTAA--AGATGGA------------AGTT-AAATA--- 3633 Query 3670 TCTTGATGTACCGCTGAGTCTTAAATCTGTAAGTGACTCCGGTGAGTTTGAAGGGTATGG 3729 | | |||| ||||| | |||||||||| ||| | |||||||||||||| |||| Sbjct 3634 TTTAAATGTTCCGCTAAAAATTAAATCTGTCTCTGAAACAGGTGAGTTTGAAGGATATGC 3693 Query 3730 CTCCGTCTTTGGTGTAAAGGACAGCCACGATGATGTGGTGATGTCCGGGG--CATTTGCT 3787 || || |||| ||| | || || || ||| | || |||||| || |||| Sbjct 3694 ATCTGTTTTTGATGTCATTGATAGTTACAGCGATATCGT--TGTCCGAGGTGCATTCCAA 3751 Query 3788 GCTTCCCTGCGGGAGTGGAGTG-ACAGAAAAGCGTTACCTGCGCTGCTCTGGCAGCACCG 3846 || || || || | | | | || ||| ||||| | |||| ||||||||| Sbjct 3752 AAATCTCT-CGAACGTTGGGCGGAGCGAGAAGATTTACCCTCAGTGCTGTGGCAGCACAA 3810 Query 3847 CATGGATGAGCCCATCGGTGTTTACACCGAAATGAAGGAAGACGATGTCGGGCTTTACGT 3906 |||| ||||| || || | ||| |||||||| || || ||| ||| |||| || Sbjct 3811 AATGGCAGAGCCTATTGGACCATTCACAGAAATGAAAGAGGATGATTACGGACTTTTTGT 3870 Query 3907 TAAGGGGCGATTGCTCATTGATGATGATCCCCTGGCAAAACGTGCACATGCACACATGAA 3966 | || || || || |||||||||||||| |||| ||||| |||||||| || ||||| Sbjct 3871 TCGTGGTCGTTTACTTATTGATGATGATCCATTGGCCAAACGAGCACATGCTCATATGAA 3930 Query 3967 GGCCGGTTCGTTAACCGGCCTTTCTATTGGGTACGTACTGAAAGACTGGGAATACGACCG 4026 || || | | || | || ||||| ||| | || ||||| |||||||| ||| Sbjct 3931 AGCTGGCAGTGTCAAAGGAATGTCGATTGGTTACATGCTCAAAGATTGGGAATATGACTC 3990 Query 4027 GAGCAAAGAAGCCTTTCTGCTGAAAGAAATCGACCTCTGGGAAGTCAGTCTGGTGACGTT 4086 |||| || || | || |||||||| || || |||||||| | | |||||| | Sbjct 3991 TGCAAAAGGTGCATTCTTACTTAAAGAAATTGATCTGTGGGAAGTGTCTATTGTGACGAT 4050 Query 4087 CCCGTCAAACGATGAGGCACGGATCAGCGACGTCAA 4122 || | || ||| ||| ||| | ||| || || Sbjct 4051 GCCCGCTAATACTGAAGCAAAGATTACCGAGGTGAA 4086 >seq4104 Length=1574 Score = 87.8 bits (96), Expect = 5e-13 Identities = 173/255 (68%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 5227 AAAGATACCGAGGGTAACTATCTGTGGCGTCCGGGGCTGGAACTGGGACAGCCATCC--- 5283 ||||| | || || |||||| | |||| || || || || |||||||||||| Sbjct 1047 AAAGACAGTGAAGGCAACTATTTATGGCAACCTGGTCTTCAAGCTGGACAGCCATCCGTG 988 Query 5284 TCACTGGCGGGTTACGGTATCGCTGAAAACGAACAGATGCCGGATATCGCCGCCGATGCG 5343 | ||| ||||| || || | |||||| | | ||||| || | || ||||| Sbjct 987 TTACT---TGGTTATGGAATTGAAGAAAACAATGACATGCCAGAAGCTGAAGCTGATGCA 931 Query 5344 AAAGCCATTGCGTTTGGTAACTTCAAACGGGGTTACACCATCGTTGACCGTATCGGCACC 5403 || | || |||||| | || ||||| | ||| || || || || ||||| || || Sbjct 930 AATTCAATCTTATTTGGTGATTTTAAACGTGCTTATACGATTGTAGATCGTATGGGTACT 871 Query 5404 CGCATCCTGCGCGACCCGTACACCAACAAACCGTTTGTCGGTTTTTATACCACCAAGCGC 5463 || || |||| || || | || |||||||| | ||| || |||||||| ||||| || Sbjct 870 CGTATTTTGCGAGATCCATTTACTAACAAACCTTATGTTGGGTTTTATACAACCAAACGT 811 Query 5464 ACCGGGGGTATGCTG 5478 || || || ||| || Sbjct 810 ACTGGTGGAATGTTG 796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128027456548768