Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq210616 102 6e-17 seq149362 100 2e-16 seq16096 98.7 7e-16 seq161123 91.5 1e-13 >seq210616 Length=3554 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || | ||||||||||| ||| | ||| | || || | || Sbjct 3141 TGAAGGGTGGACTCCTTCTAAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCGAGCTGC 3200 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || |||||| |||| | | ||| | ||| || || || || |||||| ||| || Sbjct 3201 TTTCCAGCGAATATGAGCCTTTGCTTGTCCGGAGGGATGCCCTCCTTGTCATGAATCTTA 3260 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || ||||| | | ||||| || || || ||||| || ||||| Sbjct 3261 GCT-TTCACATTGTCAATTGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTTCCTGT 3319 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || |||||| ||||| ||||||||| Sbjct 3320 CAAAGTTTTGACAAAGATTTGCATA 3344 >seq149362 Length=6446 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || ||||| ||||||||||| ||| | ||| | ||||| | || Sbjct 2630 TGAAGGGTCGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTCCCATCTTCAAGCTGC 2571 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| |||| | | || ||||| ||||| ||||| ||||| ||| ||| Sbjct 2570 TTACCAGCAAATATGAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGAATCTTT 2511 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || ||||| | | ||||| || ||||| ||||| || || || Sbjct 2510 GCT-TTCACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAGT 2452 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 2451 AAGTGTCTTCACAAAGATCTGCAT 2428 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || || || ||||| || ||||||||||| || | || |||| || Sbjct 2408 ACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCCAGTGTCCTGCCGTCCTCA 2349 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || || | || | | || ||||| ||||| ||||||||||| | Sbjct 2348 AGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGA 2289 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| || | || || || || |||| || || || ||||||||||| Sbjct 2288 ATCTTTGC-CTTGACGTTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATGGTTTT 2230 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||| || |||||||||||||| Sbjct 2229 CCCGGTCAAAGTCTTCACAAAAATTTGCAT 2200 >seq16096 Length=889 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||||||||| ||| | ||| | || || | || Sbjct 797 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTGC 738 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| |||| | | || ||||| || || || || || || ||| ||| Sbjct 737 TTTCCAGCGAATATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGAATCTTG 678 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || || ||||| | | ||||| || || || ||||| || |||||| Sbjct 677 GCTTTCACATTGTCAATCGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTCCCTGTC 618 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 |||||||| ||||| || |||||| Sbjct 617 AGAGTTTTGACAAAGATCTGCATA 594 >seq161123 Length=4290 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || ||||| ||||||||||| |||| | | | ||||| | || Sbjct 2120 TGAAGGGTTGACTCCTTTTGAATGTTGTAATCTGCTAGAGTCCGGCCATCTTCAAGCTGC 2179 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| |||| | | || ||||| ||||| || || ||||| ||| ||| Sbjct 2180 TTACCAGCAAATATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTT 2239 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || ||||| | | ||||| || ||||| ||||| || || || Sbjct 2240 GCT-TTCACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAGT 2298 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 2299 GAGGGTCTTCACAAAGATCTGCAT 2322 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || || || || || |||||||||||||| || | || | || || Sbjct 2342 ACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCCAGTGTCCTACCATCCTCG 2401 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || || | || | | || ||||| ||||| ||||||||||| | Sbjct 2402 AGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGA 2461 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| | || || || || |||| || || || ||||| ||||| Sbjct 2462 ATTTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATAGTTTTC 2521 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| ||| || ||||| |||||||| Sbjct 2522 CCTGTCAAAGTCTTCACAAAGATTTGCAT 2550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361230071377584