Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_004775.1 Length=39671 Score E Sequences producing significant alignments: (Bits) Value seq22603 201 3e-47 seq46069 147 6e-31 seq40385 147 6e-31 >seq22603 Length=751 Score = 201 bits (222), Expect = 3e-47 Identities = 269/374 (72%), Gaps = 0/374 (0%) Strand=Plus/Minus Query 6029 ATCGTGGAACAGTTGGCTAAAACCAACGACATCCTTACCGATGCGATCTATGTGCCGTGT 6088 |||||||| | | |||| || ||||||||||| | || || || || ||| Sbjct 432 ATCGTGGAGCTGATGGCAAAGCAGAACGACATCCTCATGGACGCCGAGTACATGGAGTGC 373 Query 6089 AACGACGGCTCAAAGCACAAAACCACCATCCGTGCAGGTATTCCTGAACCGGTATGGCGC 6148 ||||||||||| || ||||| |||||||| || | || || ||||| || ||||| Sbjct 372 AACGACGGCTCCAAACACAAGACCACCATGCGCTCGGGCATCCCTGAGCCAACTTGGCGG 313 Query 6149 CGCTATAACCAAGGCGTTCAGCCAACCAAAACCCAGACCGTACCAGTGACCGATACCACC 6208 | ||||| ||||| ||||||| |||| | |||||||| ||| || || ||| Sbjct 312 ATGTTCAACCAGGGCGTGCAGCCAAGCAAATCGACCACCGTACCTGTGCTGGACACGACC 253 Query 6209 GGTATGTTGTACGATCTGGGCTTCGTTGATAAGGCTCTGGCAGACCGTTCTAACAACGCC 6268 || ||| || | || ||| | || ||||| || ||||| |||| |||||| Sbjct 252 GGCATGATGGAAGACTACGGCCTGGTCGATAAAGCGCTGGCTGACCTGAGCGGCAACGCT 193 Query 6269 GCAGCGTTCCGTGTTTCCGAAAACATGGGCAAGCTTCAGGGCTTCAACAACAAAGTCGCC 6328 | |||||||||| ||||| ||| |||||||||| ||||||||||||||||||| | || Sbjct 192 GATGCGTTCCGTGCCTCCGAGAACCTGGGCAAGCTGCAGGGCTTCAACAACAAAGCCTCC 133 Query 6329 CGCTACTCCATCTACGGTAACACCGATGCTGAGCCTGAAGCTTTCATGGGCCTGGCGCCG 6388 |||||| ||||||| ||| || | | ||||| | |||||| |||| ||| | ||| Sbjct 132 CGCTACATGTTCTACGGCAACTCCCAGACCGAGCCACAGGCTTTCCTGGGTCTGACCCCG 73 Query 6389 CGCTTCAACACGCT 6402 |||| |||| |||| Sbjct 72 CGCTACAACTCGCT 59 >seq46069 Length=507 Score = 147 bits (162), Expect = 6e-31 Identities = 165/220 (75%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 7188 TGATCTCCATGGTTATTCCTCTGGCATCCCTGACCGTTGGGTACAAAACGCCGGTCATCA 7247 || |||| ||||| | || ||||| ||||| | ||| ||| | ||||||||||||| Sbjct 501 TGTTCTCGGTGGTTGTACCACTGGCCGACCTGAAGGCTGGCTACCAGACGCCGGTCATCA 442 Query 7248 CGCTGCCGATGAAGCTGGAGCGATACATCCGTCTTAACTACACCGTCACCGGTACCGCGC 7307 ||||| || |||| ||||| || | || || ||||||||||| ||||||||||||| Sbjct 441 CGCTGTCGCAGAAGACCGAGCGCTATCTGCGCCTCAACTACACCGTAACCGGTACCGCGC 382 Query 7308 CGACCACTGGCAAAGTAACCGCTGGCATTGTTGGCGGGGTGCAGACCAATGTCTAA---A 7364 | ||||||||||| || || ||||| |||| | |||||||||||||||| |||| | Sbjct 381 CAACCACTGGCAAGGTGACTGCTGGTGTTGTGGCGGGGGTGCAGACCAATGGCTAAGACA 322 Query 7365 TATCGCGTCAAAGAACGCTCCTTCATTAACGGCAAGCTCT 7404 || || || ||||| ||||| || || |||||| Sbjct 321 TACGAAGTGCTTGAGCGCTCGTTCATCAATGGGCAGCTCT 282 >seq40385 Length=547 Score = 147 bits (162), Expect = 6e-31 Identities = 369/554 (67%), Gaps = 9/554 (2%) Strand=Plus/Minus Query 6680 GTGACCACGCTGACCAAAGACGCATCAACTGGCGCTGACCTGATCAGCATGATGGTAGAT 6739 || ||||| |||||| || || | || ||||| | |||||| | ||| | | Sbjct 547 GTAACCACCCTGACCTCGGATGCGGCGACCGGCGCCAAGCTGATCGAGAACATGATCAAG 488 Query 6740 GCATATTATGCCCGCGACGTGGCAATGCTTGGTGATGGCAAAGAAGTTATCTATGCCAAC 6799 || ||||| | |||| | |||| || || ||||| || ||||| |||||| Sbjct 487 GCCTATTACCTGCTCGACAACCCGATGCAGGGCGAGGGCAAGACCGTGATCTACGCCAAC 428 Query 6800 AAAACTATCCACGCATGGCTGCACAAACAGGCTATGAATGCCAAAAACGTGAACCTTACC 6859 || ||||| | | |||||| ||||| ||||| |||| ||||| ||||| ||| Sbjct 427 CGCACCATCCAGACCTTCCTGCACCTGCAGGCAATGAACTCCAAGAACGTCAACCTCACC 368 Query 6860 ATCGAAGAGTACGGCGGCAAGAAGATCGTTTCCTTCCTGGGTATTCCTATCCGTCGTGTG 6919 | | ||||||| |||| |||||| | ||||| || || ||| ||| Sbjct 367 CTGGGCGAGTACGCCGGCCGCAAGATCCCGGAACTGCTGGGCATCCCGATCAAGCGTTGC 308 Query 6920 GATGCAATCCTCAACACTGAATCTGCCGTAACGGCGTAAGGAGAGAGAATCATGTTGCTT 6979 || | | | |||||||| ||||| ||| || |||||||| |||||| | | Sbjct 307 GACGAACTGCTCAACACCGAATCCCGCGT---GGTTTAAGGAGATC--ATCATGCTTTTC 253 Query 6980 GATCAACAGGCTT-TGTTCTCCGCGGCTCAGGCCATTACGGCCACCGCGGTATCAACCAA 7038 || ||| | || | | || || ||||| || || ||| | |||| || ||| | Sbjct 252 GA-CAAGAAACTGCTCATGTCGAACGCCCAGGCGATCACCGCCTCGGCGGCCTCGACCGA 194 Query 7039 CGTCATTGACACCGGCTCCAGTAAGGATGTCGGTAAATATGGTGATATCCCGCTGCTGAT 7098 |||||| ||| |||| || ||||| || || | |||||||||||| || Sbjct 193 CGTCATCGACCGCGGCGACACCAAGGACGTAGGCCGTGCGGCCGATATCCCGCTGTGCAT 134 Query 7099 TCAGGTTGTTGAGGCATTCAACACCCTGACAAGTCTGACGGTTACGGTGCAGACCGATGA 7158 ||||| |||||||| |||||||| ||||| |||||||| | |||||||||| || Sbjct 133 CCAGGTGGTTGAGGCCTTCAACACTCTGACCAGTCTGACCATCGAACTGCAGACCGACGA 74 Query 7159 TAACTCGTCTTTCAGTTCTGCAACGGA-CGTGATCTCCATGGTTATTCCTCTGGCATCCC 7217 ||||||| | |||||||| || || | | || |||| ||||| | || ||||| || Sbjct 73 TAACTCGGCCTTCAGTTC-GCCGCGCAGCCTGTTCTCGGTGGTTGTACCACTGGCCGACC 15 Query 7218 TGACCGTTGGGTAC 7231 ||| | ||| ||| Sbjct 14 TGAAGGCTGGCTAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126501762244704