Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq161123 96.9 3e-15 seq135156 95.1 1e-14 seq149362 93.3 3e-14 seq122442 89.7 4e-13 seq16096 87.8 1e-12 seq20564 86.0 5e-12 seq210616 84.2 2e-11 >seq161123 Length=4290 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || || ||||||||||| ||||| ||||| | ||| | |||||||| Sbjct 2570 ACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCCGCAAGAGTTCTTCCGTCCTCC 2629 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 | ||||||||| ||| | || || ||||||||||| ||| | ||||| ||||| Sbjct 2630 AACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTC 2685 >seq135156 Length=1536 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| |||| || | |||| |||||| || || ||||||||||| |||||||| | Sbjct 1096 TTCCTCCACGCAGCCGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAATCTG 1155 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 | | ||| | | ||||||| ||||||||| ||| | || || ||||||||||| Sbjct 1156 CAAGAGTTCTTCCATCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATC 1210 >seq149362 Length=6446 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || || ||||||||||| ||||| || || | ||| | |||||||| Sbjct 1952 ACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCC 1893 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 | ||||||||| ||| | || || ||||||||||| ||| | ||||| ||||| Sbjct 1892 AACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTC 1837 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| ||||| ||||||||||| ||||| || || | ||| | |||| ||| Sbjct 2180 ACCAAGTGCAAGGTAGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCTTCC 2121 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 | ||||||||| ||| | || || ||||||||||| ||| | ||||| ||||| Sbjct 2120 AACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTC 2065 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | |||||||||||||| ||||| ||||| || | || | | ||||| Sbjct 1725 CACCAGGTGAAGAGTAGACTCCTTTTGGATATTATAATCGGCAAGGGTGCGGCCATCCTC 1666 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 |||||||| || ||| | || || ||||||||||| ||| | |||||| ||||| Sbjct 1665 TAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGTATGCCCTCCTTGTC 1609 >seq122442 Length=1060 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || ||||||||||| |||| || || ||||||| Sbjct 752 CACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGCCAGGGTCCTGCCGTCCTC 811 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 || ||| ||||| ||| | || | ||||||||||||| ||| | ||||| || || Sbjct 812 CAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCCGGGGGAATTCCCTCCTTATC 868 >seq16096 Length=889 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || ||||||||||||||||| || || || | ||| | | ||||| Sbjct 576 CACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTGCAAGTGTCCTTCCATCCTC 517 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| |||| | |||||||| || ||| | ||||| || || Sbjct 516 AAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCTG 457 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGT 19008 |||||| ||| || | | | || | ||| || ||| ||| | || ||||| Sbjct 456 AATTTTAGCTTTCACATTATCAATGGT---GTCAGAGCTTTCCACTTCCAAAGTGATGGT 400 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || | || |||||||| |||||||| Sbjct 399 TTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 367 >seq20564 Length=789 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | |||||| ||||| | ||| | || ||||| ||||| ||||| ||||| | Sbjct 515 TTCCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAATCTG 574 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 | | ||| | || |||| ||| ||||| ||| |||| |||||||||||||| Sbjct 575 CAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATC 629 >seq210616 Length=3554 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| |||||| || ||||||||||||||||| || || || | ||| | | |||| Sbjct 3362 CACCAAGTGCAAAGTGGACTCCTTTTGAATATTATAGTCAGCAAGTGTCCTTCCATCCTT 3421 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||| | ||| |||| | |||||||| || ||| | |||||| ||||| Sbjct 3422 AAGCTGCTTATCTGCAAAAATCAACCTCTGCTGGTCTTGGGGAATGCCCTCCTTGTCTTG 3481 Query 18952 AATTTT 18957 |||||| Sbjct 3482 AATTTT 3487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413486368447456