Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq37850 89.7 3e-13 seq149362 86.0 4e-12 seq72254 84.2 1e-11 >seq37850 Length=568 Score = 89.7 bits (98), Expect = 3e-13 Identities = 153/217 (71%), Gaps = 14/217 (6%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT--TG--GT 33215 ||||||||||| |||||||| || || ||||||||||| | ||| |||| || | Sbjct 124 CACCAAATGCAGAGTCGACTCCTTCTGGATATTGTAATCCG-CAA---GAGTCCTGCCAT 179 Query 33216 CATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTT 33275 | ||||||||||| ||| || || || | ||||| |||| || || ||||| || | Sbjct 180 CCTCCAATTGCTTACCAGCGAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTAT 239 Query 33276 C---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 | | | | ||| || || | | |||||||||| | | ||| || ||||| | Sbjct 240 CCTGGATCTTGGCC---TTGACGTTATCAATCGTGTCGGAGCTCTCAACTTCGAGAGTGA 296 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || ||||| || ||||| |||||||| Sbjct 297 TTGTCTTCCCGGTGAGAGTCTTCACGAAGATTTGCAT 333 >seq149362 Length=6446 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/215 (70%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG--GTCA 33217 ||||||||||| ||||||||||| || || |||||||| | | | || || ||| Sbjct 2409 CACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC--AGTGTCCTGCCGTCC 2352 Query 33218 TCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCG 33277 || | |||||||| ||| || | | |||||||| | ||| ||||||||||| || Sbjct 2351 TCAAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 2292 Query 33278 CTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 |||| ||| || || | | ||| ||||| | || || |||| ||| || Sbjct 2291 TGAATCTTTGCC---TTGACGTTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATG 2235 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || | ||| || || ||||||||||| Sbjct 2234 GTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 2200 >seq72254 Length=390 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/217 (70%), Gaps = 14/217 (6%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTT-GGTCAT 33218 ||||||||| | |||||||| || || ||||||||||||| ||| | ||| || ||| Sbjct 69 CACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAG-CAA---GGGTTCGGCCAT 124 Query 33219 CC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTT 33275 || | ||||| ||| ||| || | ||| |||||||||| ||| || || || || | Sbjct 125 CCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGT 184 Query 33276 CGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 | |||| ||| || || | | ||| ||||| | | || || || || | Sbjct 185 CCTGAATCTTGGCC---TTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGA 241 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || || ||||| |||||||||||||| Sbjct 242 TAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317942209827552