Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq134381 107 1e-18 seq210190 100 2e-16 seq149362 98.7 7e-16 seq16096 96.9 2e-15 seq161123 89.7 4e-13 seq122442 89.7 4e-13 >seq134381 Length=6558 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978 || || ||| |||||| || |||||||||||| || ||| |||| ||||| || Sbjct 3904 TGCAGAGTGGACTCTTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCCAACTGC 3963 Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 ||||| || || ||||||| |||||| ||| | || | ||| || |||||| ||| || Sbjct 3964 TTTCCGGCGAAGATCAACCTTTGCTGATCCGGCGGGATACCCTCCTTATCTTGAATCTTG 4023 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 |||||| | ||| ||||| | ||| || |||| || || || || || || Sbjct 4024 GCTTTGACATTGTCAATGGTATCAGAGCTCTCTACCTCGAGGGTGATGGTCTTGCCAGTC 4083 Query 44099 AAAGTCTTCACAAATATTTGCATG 44122 |||||||||||||| | |||||| Sbjct 4084 AAAGTCTTCACAAAAACCTGCATG 4107 >seq210190 Length=6381 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| || || |||||||||||| || ||| |||| ||||| || ||||| || || Sbjct 3179 CTCCTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAA 3120 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||||| |||||| ||| | || | ||| || |||||| || || |||||| | Sbjct 3119 GATCAACCTTTGCTGATCCGGCGGGATACCCTCCTTATCTTGAACCTTGGCTTTGACATT 3060 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||||| | |||||| || | || || || || || || ||||||||||| Sbjct 3059 GTCAATGGTATCAGAGCTCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAAGTCTTCAC 3000 Query 44110 AAATATTTGCATG 44122 ||| || |||||| Sbjct 2999 AAAAATCTGCATG 2987 >seq149362 Length=6446 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT--CATCG 43969 ||||||||| || || |||||| ||||| || ||||| | | || | || | || Sbjct 2409 CACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATC-TGCCAGTGTC-CTGCCGTCC 2352 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | || ||||||||||| || | || |||||||| | || | |||||||| || Sbjct 2351 TCAAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 2292 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| ||| ||||| || ||| || |||| ||||| || | ||||| ||| Sbjct 2291 TGAATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATGGTT 2232 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| |||||||||||||| |||||||| Sbjct 2231 TTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 2200 >seq16096 Length=889 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT-CATCGT 43970 |||||| || || ||| ||| |||||||||||||| || | || || | | |||| | Sbjct 576 CACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTC-TGCAAGTGTCCTTCCATCCT 518 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 | | || || |||||||| ||||||| |||||||| | || | ||| || ||||| Sbjct 517 CAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCT 458 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 |||||| ||| || || ||| || || | ||||| || | || || |||| Sbjct 457 GAATTTTAGCTTTCACATTATCAATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGGTTT 398 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | ||||| | ||||| ||||| ||||||||| Sbjct 397 TGCCGGTGAGGGTCTTGACAAAGATTTGCATG 366 >seq161123 Length=4290 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT--CATCG 43969 ||||||||| || || ||| || || || || ||||| | | || | || |||| Sbjct 2341 CACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATC-TGCCAGTGTC-CTACCATCC 2398 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | || ||||||||||| || | || |||||||| | || | |||||||| || Sbjct 2399 TCGAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 2458 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 |||||| ||||| || ||| || |||| ||||| || | ||||| ||| Sbjct 2459 TGAATTTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATAGTT 2518 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || |||||||||||||| |||||||| Sbjct 2519 TTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 2550 >seq122442 Length=1060 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || ||| ||| || || ||||| ||||| | || |||| || Sbjct 297 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTGCGACCATCCTCG 356 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | || || |||||||| ||||||| ||||||||| | || | |||||| ||||| Sbjct 357 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGG 416 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || |||||| || | | ||||| | |||||| || | || || || || Sbjct 417 ATCTTGGCTTTGACATTATCGATGGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTTT 476 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| |||||||||||||| || ||||| Sbjct 477 CCGGTCAAAGTCTTCACAAAGATCTGCAT 505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353847868047552