Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06]
215,024 sequences; 206,414,839 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq149362 102 7e-17
seq55328 95.1 1e-14
>seq149362
Length=6446
Score = 102 bits (112), Expect = 7e-17
Identities = 149/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058
||||||||| || || || ||||| || ||||||||||| ||| || | || ||
Sbjct 2409 CACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCCAGTGTCCTGCCGTCCTC 2350
Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
| || || || ||| |||| |||||||| || || ||| | ||||||||||||
Sbjct 2349 AAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 2290
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178
||| ||| || || | ||| | || |||| ||||| |||||||||||
Sbjct 2289 AATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATGGTTTT 2230
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209
|||||||| || || |||||||||||||||
Sbjct 2229 CCCGGTCAAAGTCTTCACAAAAATTTGCATT 2199
>seq55328
Length=456
Score = 95.1 bits (104), Expect = 1e-14
Identities = 90/115 (78%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039
||| ||| | || |||||||||||| || || || || || |||| |||||||||||
Sbjct 124 TTCATCCCCTTAGCCTCAACACCAAGTGAAGAGTCGACTCCTTTTAGATGTTGTAATCCG 65
Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC 20094
| | |||| | |||||||||||||||||| ||| | || || |||||||||||
Sbjct 64 CAAGAGTTCTCCCATCTTCCAATTGTTTGCCAGCAAAGATCAGTCTCTGTTGATC 10
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418487627685744
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |