Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_005178.1 Length=37611 Score E Sequences producing significant alignments: (Bits) Value seq7292 183 7e-42 >seq7292 Length=1256 Score = 183 bits (202), Expect = 7e-42 Identities = 380/555 (68%), Gaps = 18/555 (3%) Strand=Plus/Plus Query 17060 GGCCGATCTGCGGGCCATCTTCGCCATGCGGCCGGAGGCCGCCATTGAGTACCTGGAGCG 17119 ||||||||| || ||||||| | || || | |||||||| | ||||| || | Sbjct 302 GGCCGATCTCAAAGCGATCTTCGGCCTGGATCCAGCCGCCGCCATCGCCTACCTCAAGGG 361 Query 17120 CAAGGGGTTCGCCATTACCTGGAACTGGCACGA--TGTT-GACGCGGCCACCCATGCCCG 17176 ||| || | || |||||||| | ||||| || || | || |||||| || | || Sbjct 362 CAAAGGCTATGCGGTTACCTGGGATTGGCAGGACATGCTCGATGCGGCC---CACGACCA 418 Query 17177 AGCGCTGACGGTGGCCAAGGCGTCACGCCTGGATGTGCTCCAGGACATCCGCGACGCCCT 17236 |||| | || || |||||||| ||||||||| ||||| |||||||||||| | | Sbjct 419 AGCGTTCACCGTTGCCAAGGCCATGCGCCTGGATCTGCTCTCGGACATCCGCGAATCATT 478 Query 17237 GGTCGATAACCTGGAACGTGGCGGAACGCTGCGCGACTTC-CAGCGCAACCTGCGGCCGA 17295 || |||| | ||| || |||| | ||| | | ||| ||| ||| Sbjct 479 GGAGAGCGCCCTGCAGGAAGGCAAGACCCTGCAGCAGTTCACCAAGGAAC-TGCAGCCTG 537 Query 17296 TCCTGGAGGCCAAAGGCTGGTGGGGGCGTCAGATAGTGGTTGC--GCCGGACGGCGGGGC 17353 |||||||| |||| |||||||| ||| | |||| | ||| | ||| || Sbjct 538 TCCTGGAGCAACAAGGTTGGTGGGGCAAGCAGGTCCTGGTCGACAGCCAG--GGCAATGC 595 Query 17354 CGAGGTCGCCCAGCTCGGCAGCCCGCGCCGGCTGGAAACGATCTACCAGACCAACATGCA 17413 ||| | | |||||| || ||||| |||||||| | |||||||||||||||||| |||| Sbjct 596 GGAGATGGTCCAGCTGGGTAGCCCACGCCGGCTTAAGACGATCTACCAGACCAACCTGCA 655 Query 17414 GTCGGCCTACATGGCCGGGCGCTATGCCGCCGCATACGAGGCCAGG---GAAACCCACCC 17470 | ||||| |||||||| ||| | |||| ||| |||| || | || ||||| || Sbjct 656 GAGCGCCTATATGGCCGGTCGCAAATCCGC--CAT-GGAGGACACGGTCGAGACCCATCC 712 Query 17471 CTACTGGATGTATGTGGCGGTCATGGACAGCGTCACTCGGCCCAGCCATGCGGCGCTACA 17530 ||||||| || | ||||| ||||| || || || || |||||||| ||||| | Sbjct 713 GTACTGGAGCTACATCGCGGTGATGGATGGCAAGACCCGACCTAGCCATGCTGCGCTCAA 772 Query 17531 TGGCAAGGTGTTCCGCTGGGACGACCCGATCTGGCAGCACATCATGCCGCCGAATGGCTA 17590 || ||||| ||| ||||||||||||||| |||| | ||||| || || | Sbjct 773 CGGTGTGGTGTACCGACATGACGACCCGATCTGGTCCACCATCTTCCCGCCCAACGGGTT 832 Query 17591 CAACTGCCGGTGCCG 17605 |||||||| ||||| Sbjct 833 TAACTGCCGCTGCCG 847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119926594323424