Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq114929 170 7e-38 >seq114929 Length=4696 Score = 170 bits (188), Expect = 7e-38 Identities = 506/772 (66%), Gaps = 14/772 (2%) Strand=Plus/Plus Query 718 AAGCTCGCACTGATTGAACTGCTGCCGCACACGAAGGGCGAGTGGGCATTCA---GAAAG 774 ||| |||| | || ||| |||| || || || ||||| ||||||||| | | ||| | Sbjct 872 AAGATCGCTTTTATCGAATTGCTACCTCATACCAAGGGTGAGTGGGCAATGAAGCGAATG 931 Query 775 CAACTCGTGACGTTGGAGCCCTGGCAGAAGTTCGGCCT-GATGGCGACGTTCGGCTGGCT 833 || || || ||||||| ||||| || || || | | | || || || || ||| | Sbjct 932 AAAATCT---CGCTGGAGCCTTGGCAAAAATTTGGGATAGCTTGC-ACTTTTGGGTGGAT 987 Query 834 -CAACAAGCGCACCGGCAAGCGCCGGTTTCGAGAAAGCTACTGGGAGGTCCCCAGAAAGA 892 | | || | | || | || || || |||| || || ||||| || || | |||| Sbjct 988 GCGAAAAAAGGAT-GGTTATCGTCGCTTCAGAGAGAGTTATTGGGAAGTTCCACGTAAGA 1046 Query 893 ACGGCAAATCGGTGATTGCCGCGGGCGTTGGCATCGGCATGTTCGTGCTGGACGACGAGT 952 | || ||||| | ||||| || || |||| | |||||| | | || | ||||| Sbjct 1047 ATGGTAAATCAGCAATTGCGGCTGGTGTTGCACTTAACATGTTTGCGAATGATGGCGAGT 1106 Query 953 TCGGTGCCGAGGTGTACGCCGGCGCGACGACTGAAAAGCAGGCCTGGGAGGTCTTTCGCC 1012 | ||| | ||||| || || || || || ||||| || || || |||||||| ||| | Sbjct 1107 TTGGTTCAGAGGTCTATGCAGGTGCAACAACTGAGAAACAAGCTTGGGAGGTTTTTAAAC 1166 Query 1013 CGGCGCGGCTGATGGTGAAGCGCTCGCCTGAGTTGATCGTTGCGGCTGACATCGAGGTGA 1072 | || | | |||| | || ||||||||||| || | || || | || | | Sbjct 1167 CTGCTAGATTAATGGCCATACGATCGCCTGAGTTTATTGAAGCTGCAGGTATTTTAATTA 1226 Query 1073 ATGCATCGAACATGAACAAACCCGAGGACGG--CAGTCGCTTCGAGCCGCTGATTGGCAA 1130 ||||| | | | | | ||| || || || | || || |||||| | | |||| | Sbjct 1227 ATGCAGGTAGCCTTGAAATACCAGATGAAGGTTCCGT--ATTTGAGCCGATCACTGGCGA 1284 Query 1131 CCCGGGCGACGGCGCGTCGCCATCGTGCTCCATTGTCGATGAGTACCACGAGCACGATAG 1190 || || || ||| || || || | || ||||| | || ||||| | | Sbjct 1285 TCCTCCTGATGGTCAGTCACCTCACTGTGCCGTGGTTGATGAATTTCATGAGCATCAGAC 1344 Query 1191 CGCCGCACTGTACGAAACGATGCTGACCGGCATGGGCGCGCGCCGGCAGCCGCTCATGTT 1250 | ||||| ||||| ||||||| || || ||||| || ||||| || ||| | || || Sbjct 1345 TTCAGCACTATACGACACGATGCAAACAGGGATGGGTGCTCGCCGTCAACCGATGATATT 1404 Query 1251 CATCATCACGACTGCGGGCGCGAACATCGAGGGGCCGTGCTTCGACAAGCGCCGGCAGGT 1310 | |||||| ||||| || | || || || || || | ||| || | | || Sbjct 1405 TACCATCACAACTGCAGGTTTTGATATTGAAGGTCCATGTTATGACCTTCGGAGCCGTGT 1464 Query 1311 GATCGAAATGCTCGAAGGGACGGTGCCAGACGACGAGCTTTTCGGCTGGATCTGGACGAT 1370 | |||||||| || || ||||| || || |||||||| || ||||| ||||| || Sbjct 1465 GCAAGAAATGCTATTGGGTACAGTGCCCGATGATGAGCTTTTTGGTTGGATATGGACCAT 1524 Query 1371 CGACGAAGGGGACGATTGGACCGATCCGCGCGTGCTGGCGAAAGCCAATCCGAATATCGG 1430 || || || || |||||||| ||||| || |||| ||||| ||||| ||| || Sbjct 1525 TGATGACGGAGATGATTGGACTGATCCAAATGTATTGGCCAAAGCAAATCCTAATTATGG 1584 Query 1431 AATCTCGGTCTATCAGGACTATCTGGAAAGCCAGCAGCAGCGTGCGATTAAG 1482 | || || ||| |||||||| ||| ||||||| || || ||| || Sbjct 1585 GGTTTCTGTTTATGGTGACTATCTAGAATCTCAGCAGCGCCGAGCAATTCAG 1636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 174998413407776