Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20nipponica_20[genbank_20GCA_5F000512025.1_202013-12-06] 215,024 sequences; 206,414,839 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq72254 93.3 4e-14 seq122442 91.5 1e-13 >seq72254 Length=390 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| ||||| || || |||||| || || ||||||||||| Sbjct 51 ACCACCACGCAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGC 110 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | ||| | ||||| |||||||| || | | || | ||||||||| ||| || Sbjct 111 AAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGG 170 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| ||| || ||| | | ||||| || | ||||||| Sbjct 171 GATTCCCTCCTTGTCCTGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCAC 230 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || || || || |||||||| |||||||| ||||| |||||| Sbjct 231 CTCAAGGGTGATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCATC 279 >seq122442 Length=1060 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| || || ||||||||||||| || | ||||| Sbjct 297 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTGCGACCATCCTCG 356 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || | | || || | |||||| ||| || | || |||||| ||| Sbjct 357 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGG 416 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || |||| | | |||||||| | | |||| ||| | || ||||| || Sbjct 417 ATCTTGGCTTTGACATTATCGATGGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTTT 476 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| | ||| |||||||| ||||||||| Sbjct 477 CCGGTCAAAGTCTTCACAAAGATCTGCATC 506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420147266999024